Bhyb019494.1
Basic Information
- Insect
- Bolitophila hybrida
- Gene Symbol
- -
- Assembly
- GCA_027564075.1
- Location
- JANSTU010020374.1:1-5044[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.9e-06 0.00017 21.9 1.2 1 23 311 333 311 333 0.96 2 18 7.5e-05 0.0045 17.5 0.2 1 23 339 361 339 361 0.98 3 18 6.5e-05 0.0039 17.7 1.7 2 23 368 389 367 389 0.97 4 18 1.3e-05 0.00081 19.9 2.8 3 23 397 417 395 417 0.98 5 18 2e-05 0.0012 19.3 5.6 1 23 423 445 423 445 0.99 6 18 6.9e-05 0.0042 17.6 5.7 1 23 451 473 451 473 0.97 7 18 2.1e-05 0.0013 19.3 6.4 1 23 479 501 479 501 0.98 8 18 1.4e-07 8.3e-06 26.1 2.5 1 23 507 529 507 529 0.97 9 18 7.1e-05 0.0043 17.6 6.7 1 23 535 557 535 557 0.97 10 18 0.0011 0.066 13.8 5.9 1 23 563 585 563 585 0.97 11 18 2.4e-07 1.5e-05 25.3 2.5 1 23 591 613 591 613 0.98 12 18 4.8e-06 0.00029 21.2 8.6 1 23 619 641 619 641 0.98 13 18 4.9e-06 0.00029 21.2 5.3 1 23 647 669 647 669 0.98 14 18 0.0005 0.03 14.9 9.1 1 23 675 697 675 697 0.97 15 18 1.1e-05 0.00064 20.2 5.3 1 23 703 726 703 726 0.96 16 18 8.4e-05 0.0051 17.3 0.3 1 23 732 754 732 754 0.97 17 18 5.1e-06 0.00031 21.2 1.1 1 23 764 786 764 786 0.98 18 18 2.6e-05 0.0016 18.9 0.6 1 23 792 815 792 815 0.97
Sequence Information
- Coding Sequence
- GATGGTGATGGTAACAGGGCTGTGGAAATCGTCACCTCGTCTGGTGACATGCGAGTGGATTCATCAACTATAGCAAGTGTAGCTCAGCTTGGTAAATACTGGGTACTGACGAATCTCTTTCAGGCGCCCGGTGTCTACAATGCACAGTCTAAACCTGAAAAAACAGACCAACAAAATTCAATGTCTAACGGAAACTCACAGCTTCTATTAGGCGCTCCCGAACGGGCTTCACTAAGTGCAGCCCATCCTGGTATGTCGATTCCGTTGTCGGTGATAGAATCTCAGCAGCATCTTATACAAAATATAAACGGTGGTCTCGGAATCCATGTTCCACCAGCTCATGTGCCGATGTTACACATGAGCAACGGTGATATTACTTCTAAAATACAGAAACTCTCACAAGACGTAGCCTATCAGAATCTTCGTGGTTTACATCAAACACTTCAGCAACAGCAACATCAAGCAAGTGAAGCGATTAAATTAGAACAACAACATCGGTATTCTCAGGAAGAGGCTCATAAGCTAGCCTCTATGCCACCGTTTTCCAATGACGGTAGACTAACGGGTGGTACGCAACAGATAATTGACGTTCGAAGTGCCGATGGACAGATTATACAGGTGAACATCGAGGATATCAGTCAGTTTCTCACCTACCATGAGGTATTCGGTAAACTCTCAACGGATACAAGTGCCAATACTTCTGAGACAACAACGTCAAGCACAGCACCGTCACTAACAACTACATTATCTGGCTCCAATCACCAGCACACAACAACTTCGTCTTCCTCTGGTCCGCAAACCAACTCAAACATGGTTACACCAAAATTAGAGCAAACGCCGTCAACTTCATCGGTTCCTACTTCATCGGATTCCCTGCCCATTGATGCAATGCATAATGTTGATTGCAATGGAACAGGATTGGCAGCAACGCATGCATGTGATATATGCGGCAAAATGTTTGTGTACAAATACCAGCTGATTGTTCATCGGCGTTACCACAGTGAACGTAAACCATTTGTGTGTCAGGTGTGCGGTCAAGCCTTTAGCAATACTTTAGAGTTAACAACACATGGTAAAACGCACGAAAACAACAGCATGCTAACGTGCAATGTTTGCTTTCATGTTTTTGCCAGTGACTctagtctagagcgacacatgaagcgtcattcgaccgataaaccatttgggtgcagcatctgccaaaagacattcgcacggaaggaacatttagagaatcattttcgtagccatacgggtgaaacaccgttccgttgtcaatattgtgccaaaacatttacacgcaaagaacatatgcaaaatcatgtacgaaaacataccggagacacgccacatcgttgtgatatatgtaaaaaatctttcacacgaaaggaacactacgtaaaccactatatgtggcatacaggtgaaacaccacatcaatgtactgtttgctttaaaaagtatacccgcaaagagcacctagccaatcacatgcgatcacacaccaatgacacaccattccgttgcgagatatgcggcaaatcgtttactcgaaaagaacactttacaaaccacattctatggcacactggtgagacaccacaccgttgtgatttttgttcaaaaacctttacacgcaaagaacacctgttaaatcatgtacgtcagcacacgaatgagtctccacatcgttgtgagttttgcatgaagtcgtttacgcgcaaagaacacttagtaaaccacgttcggcagcatactggcgagacaccttttaaatgtgagtactgtcctaaagcattcacacgtaaagatcatctggtcaatcatgtacgtcaacataccggagaatcaccgcacaagtgtacatactgcacaaaaacatttacgcgcaaggaacatctaacgaatcacgttcgaaaacacacaggtgattcaccgcacaaatgccaatactgtcaaaaggtgtttacccggcgcgagcacctaaacaaccacgtgatgatccatacgggtgtatcaccgcacaagtgtgaattttgtgcaaagacttttacgcgaaaagagcacctaactaatcatctgaaacatcattccggtgataatccacacgtttgtacagtatgcaacaaaccttttacacgaaaggaacacttgatcaatcatatgGCAAGGTGTCATATAGGTGATCGACCGTTTGCGTGCGAAGAGTGTGGCAAATCATTTCCACTGAAAGGCAATTTGTTGTTTCACCAACGTAGTCATAATAAAGGTGTCAAAGCTGAACGTAATTTTGTTTGTGACTTGTGTCCAAAAGATTTTATTTCAAAGGGTCACCTTGTTTCCCATCGACGTACCCACTCTGGTGATCGTCCATTTGTCTGTCTGACATGCGGCAAATCGTTTATGGGAAAAGCTAACTGGTTACGTCACATGAAACGAACTCATCCGGATATCGCAAATCCGCAATTCCGTAAGTTTTGA
- Protein Sequence
- DGDGNRAVEIVTSSGDMRVDSSTIASVAQLGKYWVLTNLFQAPGVYNAQSKPEKTDQQNSMSNGNSQLLLGAPERASLSAAHPGMSIPLSVIESQQHLIQNINGGLGIHVPPAHVPMLHMSNGDITSKIQKLSQDVAYQNLRGLHQTLQQQQHQASEAIKLEQQHRYSQEEAHKLASMPPFSNDGRLTGGTQQIIDVRSADGQIIQVNIEDISQFLTYHEVFGKLSTDTSANTSETTTSSTAPSLTTTLSGSNHQHTTTSSSSGPQTNSNMVTPKLEQTPSTSSVPTSSDSLPIDAMHNVDCNGTGLAATHACDICGKMFVYKYQLIVHRRYHSERKPFVCQVCGQAFSNTLELTTHGKTHENNSMLTCNVCFHVFASDSSLERHMKRHSTDKPFGCSICQKTFARKEHLENHFRSHTGETPFRCQYCAKTFTRKEHMQNHVRKHTGDTPHRCDICKKSFTRKEHYVNHYMWHTGETPHQCTVCFKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTNESPHRCEFCMKSFTRKEHLVNHVRQHTGETPFKCEYCPKAFTRKDHLVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRKHTGDSPHKCQYCQKVFTRREHLNNHVMIHTGVSPHKCEFCAKTFTRKEHLTNHLKHHSGDNPHVCTVCNKPFTRKEHLINHMARCHIGDRPFACEECGKSFPLKGNLLFHQRSHNKGVKAERNFVCDLCPKDFISKGHLVSHRRTHSGDRPFVCLTCGKSFMGKANWLRHMKRTHPDIANPQFRKF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00211775;
- 90% Identity
- iTF_00211775;
- 80% Identity
- iTF_00211775;