Bcin004357.1
Basic Information
- Insect
- Bolitophila cinerea
- Gene Symbol
- Aef1
- Assembly
- GCA_010015015.1
- Location
- JAAAKO010003458.1:3702-4298[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0031 14 6.2 0.0 21 48 14 41 8 45 0.86 2 4 0.00074 3.4 8.2 0.0 22 47 43 68 40 73 0.85 3 4 0.0041 19 5.8 0.0 21 47 70 96 68 101 0.84 4 4 9.1e-05 0.42 11.1 0.1 21 51 98 128 94 131 0.87
Sequence Information
- Coding Sequence
- ATGTCGGGCGAGACCTCATACAAGAAAATGACAATCACTGGCGAGAAACCGTTCCGTTGTTCTGTCTGCGAGAAAACCTTTAGGCAGCTCAGCACCCTTACGAACCACTACAAAATCCACACCGGAGACAAACCATTCAAGTGTGTAATTTGCGAGAAAAAGTTTCGTCAGTCCAGTACGCTTACGAATCACGCTAAGATTCACACCGGCGAGAAACCGTTCCTGTGCCCTTGGTGCCAGAAACCCTTTCGACAGCTCAGCACACTAACGAATCATCAGAAAATTCATACCGGTGAGAAACCATTTGAGTGTGCCGTATGCAAGAAGCAGTTTAGGCAGTCAAGCACCCTGAACAATCACATCAAGATACACGTTGGTGATAAACCATTCATGCAAGAAATGCAGGACATTCAAGATCTTCACGATCAACAGATGCAGGCACAACAGATGCTTGCCCATGCGGTTGCTGTTGGAAATGTTCTTCCACATCTGCATCCCATGAAGCAGGAGCGTGACTTGCACCATGAGCTCGTCGAAGCACAGAATCTGGTACTGATGCATCCCAGCAAGCACGAGTCTGACAGTAACAGTACGTGA
- Protein Sequence
- MSGETSYKKMTITGEKPFRCSVCEKTFRQLSTLTNHYKIHTGDKPFKCVICEKKFRQSSTLTNHAKIHTGEKPFLCPWCQKPFRQLSTLTNHQKIHTGEKPFECAVCKKQFRQSSTLNNHIKIHVGDKPFMQEMQDIQDLHDQQMQAQQMLAHAVAVGNVLPHLHPMKQERDLHHELVEAQNLVLMHPSKHESDSNST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00211895;
- 90% Identity
- iTF_00211895;
- 80% Identity
- iTF_00211091;