Bcin006220.1
Basic Information
- Insect
- Bolitophila cinerea
- Gene Symbol
- -
- Assembly
- GCA_010015015.1
- Location
- JAAAKO010000685.1:1311-4564[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 2.5 1.2e+04 -3.1 0.0 39 50 260 271 255 274 0.70 2 8 0.00064 2.9 8.4 0.2 26 52 351 377 333 378 0.93 3 8 0.00012 0.56 10.7 0.0 22 44 375 397 372 411 0.89 4 8 0.88 4e+03 -1.6 0.0 23 45 410 432 401 440 0.80 5 8 0.58 2.7e+03 -1.1 0.3 26 43 441 458 436 462 0.71 6 8 0.004 18 5.9 0.0 21 48 464 491 458 495 0.82 7 8 0.013 58 4.3 0.0 21 45 492 516 488 524 0.82 8 8 0.0021 9.4 6.8 0.0 21 45 576 600 570 608 0.84
Sequence Information
- Coding Sequence
- ATGGATAACAATCTACTGTATCATGGCGTGGATAATGTGTGTCGCGGTTGTCTCGGAAAAAAGGGTGAGATGCAGAAGCTCTTTGGAACGTGCCTGGACACAATGCTGATGACCGTAGCTGAGGTTCAGGTACAACCTGGTGACGGACTGCCAGAACTCATGTGCGTACAGTGTGTCCTCCAGGTCAGCCGTGCCTTTACGTTCAAGCAACAGTGCGAACGATCCGATGCTACACTTCGTTTGTACTGCCAACAGATGGCCAAGAACAGTGCGGACATTCAGGCAGATCAAACGGCAGCGGTAGTGGACGCCACCGATGACATAAATCTCGAAGGACCCGTTAAGTTAGAGTTCTCAAACGGGGAAAAGTGCCTATTGATCGTACAGCATTTACCACAGATGACAATGGACACGGACAGAAGTAATAATGCTGGATCAATGGAACTGCACGCACAACAGATTATCGGTGGCTCGTTGGTGGATTCCAAAAATGACATTGTACTAAACATGTGCACCGGCACCGAGACACAGCAAGCACCTACTTTGATGATTATGCAGGACGGTCATTCTAGTATTAAGGATGAGGATGACATGTCAACTGTTCCCATGCACTTGATTCAACACTCTGACGATTTGATTAATGATCCGTTTGAATCCTATACAGTCGGCGAGGACGGAAGCATGCAGCTGCGTGATGACCAAAACGAGTTCATTGAAGAGCAAACGGACATTCAGTCATATTGTGTGGACTGTGGCCTGGACTTTAGTACCGTGGACGATCTGCGAAGGCATCAGATTGAACAACATCATGCCATCGATCCGGACACAATAATGACGCACTGTTTCGAGTGTTCACTGGACTTTGAAAATGAGACCGAACAACGGTTACACCAACAACAAGTACACGAAAATATACTGTCCAATAGTCCACCAGCTCCAGCCGAAGCAGCACCACAACAACCACCTTCAGTTGTTAAGGCCACAACCTCTTCAAAACGTTCCTCTTCAACGAAACCTAAACCTGACTACGTTCTCGGTGCGCACACATACGATTGTCCCGACTGCAAGAAGCAGTTTCACGAGTCCAAGGTGTTGCGGCGTCACATGAAGATACACTCGCTGAATAAACCGCACACCTGTGACGTGTGCTACATGTCCTTTGCAGAGAGCTCGAACCTAACGAAGCACAAGAAGAAGCACACCGGGGAACTTCGAAATGTCGTGGGCAAACCGAATCTCTGTTCGGTCTGTGGCAAGAGCTTCAAGTGGGCTAGCTCACTGTCAAAGCACATGAAACATCATACCCGACATAAGATCCTGACGTGCCCGTACTGTCCGAAGTACTATGTGGAGGCACGCTCTTTAAATATTCATGTGCGTAGTCACACCGGTGAGAAACCGTTCGTATGCGATGTGTGCAACAAGGGTTTCACGCAGATGGGAAATCTGGACAAGCACATGCGAGTGCACACCGGTGAGAAACCGTTTATGTGTCCGGTGTGCGGTAAAGGATTCTCGCAGAGTGGCTACGTGGCAATACACTTGCGTACTCACACCGGTGAGAAGCCGTACCTGTGCACAGACTGTGGCAAGGGTTTCGCAGGATCGAATACACTGTTGATACACAAGCGTACGCATACCGGCGAACGTCCGTATCCGTGCAAGGTGTGTGGTAAGACGTTTGCCAGGCAGGAGACGGCGATTATACATCAGCGCACGCACACCGGTGAGAAACCGCACATCTGTAATATATGCTATCGAGGATTCACGAGCTCCGGACATCTCACAGGGCATTTACGCTCGCACTCGGGCGATAAGCCGTTCGAGTGCACCGGGTGCTTGAAGCGGTTTGCCAACAGGAGCAGCATGAAGGTGCACATGCGAAATCACACACACGGCGGTGAACTGCCATTGCTAACTACCGGCGACGATGATAACGACAGCAAGGAGCTTACGTGTGCCCATTGTGATCTGGTTTTCGACACAATGTCCGCACTCGAGGAGCACGAGTTCGAACACTCGATGACGGCCATCGGTGACCTAGACGACGTTGTTCTACACGCTACCAATCCGAATCACGTGATCCAAGTGATCTCCGAGGAGATCATTGAGGATTCTATCATTATAGAAGCAGCAAGCCAGCTAAATCACCATCAGTTGCTCACTGGAGACTAA
- Protein Sequence
- MDNNLLYHGVDNVCRGCLGKKGEMQKLFGTCLDTMLMTVAEVQVQPGDGLPELMCVQCVLQVSRAFTFKQQCERSDATLRLYCQQMAKNSADIQADQTAAVVDATDDINLEGPVKLEFSNGEKCLLIVQHLPQMTMDTDRSNNAGSMELHAQQIIGGSLVDSKNDIVLNMCTGTETQQAPTLMIMQDGHSSIKDEDDMSTVPMHLIQHSDDLINDPFESYTVGEDGSMQLRDDQNEFIEEQTDIQSYCVDCGLDFSTVDDLRRHQIEQHHAIDPDTIMTHCFECSLDFENETEQRLHQQQVHENILSNSPPAPAEAAPQQPPSVVKATTSSKRSSSTKPKPDYVLGAHTYDCPDCKKQFHESKVLRRHMKIHSLNKPHTCDVCYMSFAESSNLTKHKKKHTGELRNVVGKPNLCSVCGKSFKWASSLSKHMKHHTRHKILTCPYCPKYYVEARSLNIHVRSHTGEKPFVCDVCNKGFTQMGNLDKHMRVHTGEKPFMCPVCGKGFSQSGYVAIHLRTHTGEKPYLCTDCGKGFAGSNTLLIHKRTHTGERPYPCKVCGKTFARQETAIIHQRTHTGEKPHICNICYRGFTSSGHLTGHLRSHSGDKPFECTGCLKRFANRSSMKVHMRNHTHGGELPLLTTGDDDNDSKELTCAHCDLVFDTMSALEEHEFEHSMTAIGDLDDVVLHATNPNHVIQVISEEIIEDSIIIEAASQLNHHQLLTGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00210984;
- 90% Identity
- iTF_00210984;
- 80% Identity
- iTF_00210984;