Bcin022079.1
Basic Information
- Insect
- Bolitophila cinerea
- Gene Symbol
- -
- Assembly
- GCA_010015015.1
- Location
- JAAAKO010000408.1:14475-16186[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 9.3e-05 0.43 11.1 0.1 13 46 185 218 182 226 0.90 2 8 1 4.7e+03 -1.8 0.0 26 44 227 245 223 248 0.80 3 8 0.00048 2.2 8.8 0.2 21 45 278 302 272 310 0.85 4 8 0.099 4.5e+02 1.4 0.0 21 44 306 329 303 334 0.87 5 8 0.0021 9.8 6.7 0.0 21 43 334 356 323 360 0.86 6 8 0.004 18 5.9 0.0 18 45 358 386 355 394 0.81 7 8 0.0011 5.3 7.6 0.4 22 47 419 444 410 450 0.85 8 8 0.00022 1 9.9 0.0 22 47 499 524 490 528 0.85
Sequence Information
- Coding Sequence
- atggaGAAGTCCGATATAAATTTAGTTTCCGGCAGCGTTGCAAGTAAAAAACATgctaaaaacaacaaacaacaaacaaacaaaaacaagcaaaaaacagaagcaaaaaaaacaagggaAAAGGACTCAGCTGAAGATCAAGTAGATGTTGGTAAACAGAATAAAGTTGAATATCATCAAGTGAAACAGGATACTGCAGAGAATGGTAACATAATAACTCACATCGATTATTCGTTTTCGGATGTTAAAGAGGAAGTCAAAGATCCCCTTCAAGAAAACGTTTTAGACATGGTACCTCACAGCGATTATTCGTATTCACTTGTTAAAGAGGAAGTCAAAGATCCTCTTCAAGAAAATTTTTGTAATGAGCACATAGCAGACGAAGACACAAGTTATGATAAATTAGCAGTTAATAAGTTTGTCACTGTTATTAAAATCGAGGAAAACAATCAGAACGACGAAAACGAGAACGAGCATCATTTGCTTAAACTCGAGGACCAGCAGCAAGCAACTTCATCTGTTGAGggaaatgaaatacaaaaagaaaTGGTACACAAAAATCGATCTAAAATCAAACCAACTCTACCTTTCAAGTGTGACATATGCAAAAAGCACTTTCGCTTCTCCAGCAATTTAAAgaagcataaaaaaatacatttgggaTGTACACCAAATTTAATGTGTGAGATATGTGCAAAAGTGCTCAAAAATCTCACAACGTACAAAAATCACATTCAGACGCATTCGGACGAAACGGCATGTCTATGCAGCGAATGCGGCGCAGGCTTTAAGACGAAAAAAGCATTAATTTATCACAAGACTTTACATAACACAAACAATCCACACACGTGCAAAGTGTGCAACAAATCCTACCGCCAGGCTAACTCATTACAAGTTCACCTACTCACGCACACTGGAGAAAAGCCGTTTTTGTGTGGCATTTGTGGCAAAGGAATGGCTCAGAAAAGTGGAATTAAAaaaCATATGCTAACACATACTGGCGAGAAACCGCTTCAGTGTGACATATGTGACAAGACCTTTCGCTATTCCAGCAACCTGATAATGCATAAAAGATCTCATTCGGGTGAGCGTCCGTATATGTGCAAGATTTGCGACAAGTCTTTTGCTGGCAGCAATGCATTGAGGACTCACACGATCATTCACACCGAAGATAAACCGTTCAACTGTGAGTTCTGCAACAAGAACTTCAATCGGAAAAGCACTCTAAATATGCACAGAAATATTCACACGGGTGAGAATAGACACTCCTGTAAAGTGTGCAACCAAACATTTAGTCAGTGTCGCAATCTAAAATCTCACATTTCCTCGTTTCATGCGGAACAAAAAAATGGCAACAAACCGTTTACTGGTAGTGATGCATTGAAGAAACATACGATTATTCACACTGGGAAAAAACCGTTTAGCTGTGAGTTCtgcataaaaaaattcaatcgtaAAAGCGACCTTAATGAGCACAAGAATACGCACACGGGAGAAAATAAACCCACCTGCAAAGTGTGCAATAAAACGTTTAGTCAGCGTCGCAATCTAAAATCTCACATGTCAAAGTTCCATGCGGAACAACAAGAGCAATCATAA
- Protein Sequence
- MEKSDINLVSGSVASKKHAKNNKQQTNKNKQKTEAKKTREKDSAEDQVDVGKQNKVEYHQVKQDTAENGNIITHIDYSFSDVKEEVKDPLQENVLDMVPHSDYSYSLVKEEVKDPLQENFCNEHIADEDTSYDKLAVNKFVTVIKIEENNQNDENENEHHLLKLEDQQQATSSVEGNEIQKEMVHKNRSKIKPTLPFKCDICKKHFRFSSNLKKHKKIHLGCTPNLMCEICAKVLKNLTTYKNHIQTHSDETACLCSECGAGFKTKKALIYHKTLHNTNNPHTCKVCNKSYRQANSLQVHLLTHTGEKPFLCGICGKGMAQKSGIKKHMLTHTGEKPLQCDICDKTFRYSSNLIMHKRSHSGERPYMCKICDKSFAGSNALRTHTIIHTEDKPFNCEFCNKNFNRKSTLNMHRNIHTGENRHSCKVCNQTFSQCRNLKSHISSFHAEQKNGNKPFTGSDALKKHTIIHTGKKPFSCEFCIKKFNRKSDLNEHKNTHTGENKPTCKVCNKTFSQRRNLKSHMSKFHAEQQEQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00210991;
- 90% Identity
- iTF_00210991;
- 80% Identity
- iTF_00210991;