Bcin002160.1
Basic Information
- Insect
- Bolitophila cinerea
- Gene Symbol
- -
- Assembly
- GCA_010015015.1
- Location
- JAAAKO010000756.1:12186576-12190168[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 3.4e-06 0.00024 21.7 1.2 1 23 323 345 323 345 0.96 2 18 4.2e-05 0.003 18.3 0.2 1 23 351 373 351 373 0.98 3 18 7.8e-05 0.0055 17.4 1.7 2 23 380 401 379 401 0.97 4 18 1.5e-05 0.001 19.7 2.9 3 23 409 429 407 429 0.98 5 18 2.3e-05 0.0017 19.1 5.6 1 23 435 457 435 457 0.99 6 18 8.3e-05 0.0059 17.3 5.7 1 23 463 485 463 485 0.97 7 18 2.5e-05 0.0017 19.0 6.4 1 23 491 513 491 513 0.98 8 18 1.6e-07 1.2e-05 25.9 2.5 1 23 519 541 519 541 0.97 9 18 8.5e-05 0.006 17.3 6.7 1 23 547 569 547 569 0.97 10 18 0.00023 0.016 16.0 5.7 1 23 575 597 575 597 0.97 11 18 2.9e-07 2e-05 25.1 2.5 1 23 603 625 603 625 0.98 12 18 5.8e-06 0.00041 21.0 8.6 1 23 631 653 631 653 0.98 13 18 1.8e-06 0.00013 22.5 5.3 1 23 659 681 659 681 0.98 14 18 0.0006 0.043 14.6 9.1 1 23 687 709 687 709 0.97 15 18 1.3e-05 0.00089 19.9 5.3 1 23 715 738 715 738 0.96 16 18 0.0001 0.0071 17.1 0.3 1 23 744 766 744 766 0.97 17 18 2.2e-06 0.00016 22.3 1.1 1 23 776 798 776 798 0.98 18 18 9.3e-06 0.00066 20.3 0.4 1 23 804 827 804 827 0.97
Sequence Information
- Coding Sequence
- ATGCATTCAGAGAACAATGATGGGCAGCGAATCGTCGTCCAGCATAATGATGATGGTAGCAGTAGAGCTGTGGAGTCTGGCGTGGACAATTCCACAGTAGCTAGGAGTAGTGTTGCTCAGCTAGGTAAATACTGGGTACTGACGAATTTCTTTCAGGCGCCCGATGTCTACAATGTACAGCCAACGACAAAGCTCATAAAATCCGACCAACAAAATGCTATGTCTACCGGTATTCCAAATCATGCACTCGGTGCCTTACGAGCACCTGTAAACTTAGCCCATTCCAGTATGTCTATTCCGTTGTCAGTtattgAATCCCAACAACATTTGATACAGAATATTAATGGACTTGGACTCCATGGACCGCCCGGTCATGTGCCAATGTTACACATGAGCAATGGCGgcataaactcaaaaattcaGAAACTCTCGCAAGACGCAGCCTATCAAAATCTTCGTGGTCTTCATCAAACGCTTCaaCAACATCAAGCCAATGAAGCCATTAAACTAGAGCAACAACATCGGTATTCCCAGGAGGAGGCTCACAAACTTGCGTCTATGCCACCATTCTCTAGTGATGGTCGATTATCGTCAGGCACCCAACAAATAATTGACGTTCGCAGTGCTGACGGTCAAATCATTCAAGTCAACATCGAAGACATCAGCCAATTCCTTACCTACCACGAGGTATTCGGTAAACTGTCATCGGACACGAGTACAAACACTTCTGAGGCTACCTCTTCCAGTTCAGCGGCCACAATGACTACCACAATATCCGGTTCAAATCACGCACACTCCTCTACTGGCGTTGCCGCCTCAACTTCCGGTCAACAGACCAGCACGAATATGGTTACGCCCAAACTAGAGCAAATACCGTCCTCATCATCATCCGCTGCCCCATCAGAATCACTAGCCCATGACGCATTGCATAATGTCGACTGCAATGGCACCGGTCTCACCGCAACGCATGCTTGTGACATTTGCGGTAAAATGTTCGTTTACAAGTATCAGTTGATTGTGCATCGTCGGTACCACAGTGAACGCAAACCATTCGTTTGTCAGGTCTGCGGTCAGGCATTCACAAATACGATTGAGCTCACTACACATGGTAAAACGCACGAGAACAATACTATGCTAACGTGTAATGTGTGCTTTCACGTTTTTGCCAGTGATTCGAGTCTCGAGCGTCACATGAAGCGTCACTCTACGGACAAACCGTTTGGTTGCACCATTTGTCAGAAGACGTTCGCACGCAAGGAACATCTAGAGAATCATTTCCGTAGTCACACAGGTGAGACACCGTTCCGATGTCAGTATTGCGCAAAGACGTTCACACGTAAGGAACACATGCAAAATCACGTTCGCAAACACACCGGTGACACTCCGCATCGCTGTGACATTTGCAAGAAATCGTTTACACGTAAAGAACACTATGTGAATCACTATATGTGGCACACCGGTGAGACGCCGCATCAGTGTACCGTGTGCTTTAAGAAGTACACTCGCAAGGAACATCTTGCGAATCACATGCGCTCGCATACAAACGACACTCCGTTTCGTTGTGAGATCTGCGGCAAATCGTTTACGCGCAAAGAGCATTTTACAAATCATATACTCTGGCACACCGGCGAGACTCCGCATCGCTGTGACTTTTGCTCAAAAACGTTTACTCGAAAGGAGCACCTGTTGAATCACGTCCGTCAGCACACAAACGAGTCACCGCATCGCTGTGAGTTCTGCCTAAAGTCGTTTACGCGCAAGGAACACCTAGTGAACCATGTACGACAGCATACCGGTGAGACACCGTTCAAATGCGAGTACTGCCCGAAAGCATTCACTCGAAAAGATCATCTTGTGAATCATGTGCGTCAGCATACTGGTGAGTCACCGCACAAGTGCACGTACTGCACGAAAACATTTACGCGCAAGGAGCACTTAACGAATCACGTGCGTAAGCACACCGGGGACTCGCCGCACAAGTGTCAGTACTGTCAAAAGGTGTTTACGCGTCGCGAGCACTTGAACAATCATATAATGATACATACGGGTGTGTCTCCGCACAAGTGTGAGTTCTGTGCAAAGACGTTTACGCGAAAGGAACATCTCACAAATCATCTTAAGCATCACTCCGGTGATAATCCACACGTGTGCACTGTGTGCAATAAACCGTTTACACGTAAGGAACATCTGATCAATCATATGGCACGGTGTCACATCGGTGACAGACCATTTGCGTGCGAGGAGTGCGGCAAGTCTTTTCCGCTGAAGGGAAATCTTCTGTTTCACCAGCGCAGTCACACGAAAGGCATCAAGGCCGAACGGAATTTTGTGTGTGATCAGTGCCCGAAAGATTTCATTTCAAAGGGTCATCTTGTGTCTCACCAACGCACTCATTCCGGTGAACGACCGTTTGTTTGTCTGACTTGCGGCAAGTCATTTATGGGCAAAGCTAATTGGACGCGACACATGAAACGAGCACATCCTGATATTTCGAATCCACAATTTcaaGCCCATCCCCTCCTGAAAGCAGAACCCTCAACGACCGCTGCATCTGTGCCCACGTCCACCATAACCTCATCACAGAGCGcacaacagcagcagcacagCAGTCATCAGCCCCAACAGCAACAGCTGCATCCACAGCTCCATCAATCTATACCACATCCGTCACACCAGATAATTCATCACCTACAACACAGTCAtctgcagcagcagcagctgcaacagcagcagcatcacCATCAGCAGCATTTACAGCTACTACACGAGAATGGCTCTGCTGGTGGCGTCGGTCTACCACCGCCTTCGGTTCGTTCAGACTTGCCGATCCTAATAAACTCACCGGGTCTCAGTGCGCCGATTCAGATTCATCATCTTGTGCCGAGTGCCGTTGACCAGCATTCGGTTGTTTATTAG
- Protein Sequence
- MHSENNDGQRIVVQHNDDGSSRAVESGVDNSTVARSSVAQLGKYWVLTNFFQAPDVYNVQPTTKLIKSDQQNAMSTGIPNHALGALRAPVNLAHSSMSIPLSVIESQQHLIQNINGLGLHGPPGHVPMLHMSNGGINSKIQKLSQDAAYQNLRGLHQTLQQHQANEAIKLEQQHRYSQEEAHKLASMPPFSSDGRLSSGTQQIIDVRSADGQIIQVNIEDISQFLTYHEVFGKLSSDTSTNTSEATSSSSAATMTTTISGSNHAHSSTGVAASTSGQQTSTNMVTPKLEQIPSSSSSAAPSESLAHDALHNVDCNGTGLTATHACDICGKMFVYKYQLIVHRRYHSERKPFVCQVCGQAFTNTIELTTHGKTHENNTMLTCNVCFHVFASDSSLERHMKRHSTDKPFGCTICQKTFARKEHLENHFRSHTGETPFRCQYCAKTFTRKEHMQNHVRKHTGDTPHRCDICKKSFTRKEHYVNHYMWHTGETPHQCTVCFKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTNESPHRCEFCLKSFTRKEHLVNHVRQHTGETPFKCEYCPKAFTRKDHLVNHVRQHTGESPHKCTYCTKTFTRKEHLTNHVRKHTGDSPHKCQYCQKVFTRREHLNNHIMIHTGVSPHKCEFCAKTFTRKEHLTNHLKHHSGDNPHVCTVCNKPFTRKEHLINHMARCHIGDRPFACEECGKSFPLKGNLLFHQRSHTKGIKAERNFVCDQCPKDFISKGHLVSHQRTHSGERPFVCLTCGKSFMGKANWTRHMKRAHPDISNPQFQAHPLLKAEPSTTAASVPTSTITSSQSAQQQQHSSHQPQQQQLHPQLHQSIPHPSHQIIHHLQHSHLQQQQLQQQQHHHQQHLQLLHENGSAGGVGLPPPSVRSDLPILINSPGLSAPIQIHHLVPSAVDQHSVVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00211775;
- 90% Identity
- -
- 80% Identity
- -