Bcin010699.1
Basic Information
- Insect
- Bolitophila cinerea
- Gene Symbol
- bab1
- Assembly
- GCA_010015015.1
- Location
- JAAAKO010007556.1:16598703-16600201[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.4e-17 7.2e-14 51.6 0.0 1 43 28 71 28 73 0.95 2 2 2.2 4.5e+03 -2.2 3.9 6 26 175 197 173 198 0.89
Sequence Information
- Coding Sequence
- ATGTGGCAAAAGTGCTGGAACACCAATCAAAATCTGATACATCACCTGCGATTTCGCGAACGTGGACCCCTGAAGTCGTGGCGCCCCGAGACCATGGCCGAGGCCATTTTCAGTGTGCTCAAGGACGGCCTGTCACTGTCACAGGCCGCCCGCAAGTACGACATTCCATATCCGACCTTTGTACTGTACGCGAACCGAGTGCACAATATGCTCGGACCGAGCATTGACGGTGGCACCGATTTACGGCCGAAGGGACGCGGTCGACCGCAACGCATTCTGCTCGGCATCTGGCCCGACGAGCACATCAAGGGCGTCATAAAAACGGTGGTGTTTCGTGATGCAAAAGAATTCAAGGAGGAGAGCGGTGGCGGCGGAGGCGGAAATATGCACATGAGCTATGGACGGCATTCGCCGGTGTATCCCTTTCAAGACGGTCAAATGGGCTTCCCGGGAACACCATGCTCGAATGGTCTAGGCTCGCAAGGTCCTCACTCGGGCAACGACACACTGTCACCGGAAGCTGCAGCTGCAGTGGCCGCAGTGGTTGGCCTACGTCAACAAATGCAGATGGCCGCTGCGGCACAGCATCACTCCGAGACTGGCGGTGGTTTCAATCTTCCGGCACACTGTGTGAACATGCATGCAAACAATGGTGGATCGGCGGGCTCGATTCCGATGCCCAAGCTCGGCTCACCGGCCACGTCGGGTCAACAGCTCGGCAACAACGGTGGCGTACCGATGCCAAGGCATGCATCACCAGCAATGGCAAGCATGTCCAACAATGTGGTACACAGTTTGGCCGGTATACCGGGACTACACATTATGCAGGGCATGATGTCCGCACAATCTAGTCAAGGCGTCACAATTTCGCCAGCTCACGGAAATCATAATTCCAGTAGCAATGCGGCCGCCCAAGCGCAACAGCACCTCCttcagcagcaacagcaacagcagcagcagcagcaacaacaacaacagcagcaacaacagcagcagcagctgcaTCACCACCATCATCAGAACCATCAGAACGCAATGGCTCACCACAATGCAGCCGCAGCAGCCGCCGCAGCCGCTGCAGCCGCTGCCGGCGCCCTGAACATCTCTCGGATATCATCGCCGGCTGGTTCGGCGCATGACCTGCGTATGACGAGTCCGGACGAGAATCAGATGCACTCCCCGCTGAACATGCCCATGGAGTCCGGTGTGAATCTAGCAGTGGGCGTCAGCGGTATGGCATACAAACCATCACGCGGCTACTCACCGCCAAGGCCAGAGCATCTGTTCCAGGAGGACATCACCGATTTCGTGACGGCCGTGCCGCGCTCGTGTCCATCGCGGATGAACAGCTTCAAAGAGCCGTCCGGTGGCATCAAGATCGAACCGATGGCCGACTGTCGCGGCGATTGA
- Protein Sequence
- MWQKCWNTNQNLIHHLRFRERGPLKSWRPETMAEAIFSVLKDGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGTDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKEFKEESGGGGGGNMHMSYGRHSPVYPFQDGQMGFPGTPCSNGLGSQGPHSGNDTLSPEAAAAVAAVVGLRQQMQMAAAAQHHSETGGGFNLPAHCVNMHANNGGSAGSIPMPKLGSPATSGQQLGNNGGVPMPRHASPAMASMSNNVVHSLAGIPGLHIMQGMMSAQSSQGVTISPAHGNHNSSSNAAAQAQQHLLQQQQQQQQQQQQQQQQQQQQQQLHHHHHQNHQNAMAHHNAAAAAAAAAAAAAGALNISRISSPAGSAHDLRMTSPDENQMHSPLNMPMESGVNLAVGVSGMAYKPSRGYSPPRPEHLFQEDITDFVTAVPRSCPSRMNSFKEPSGGIKIEPMADCRGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00211554;
- 90% Identity
- -
- 80% Identity
- -