Bger023602.1
Basic Information
- Insect
- Blattella germanica
- Gene Symbol
- -
- Assembly
- GCA_003018175.1
- Location
- PYGN01001172.1:129421-135090[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.52 2.5e+03 -0.7 0.0 21 45 151 175 140 182 0.77 2 13 0.028 1.3e+02 3.4 0.1 26 47 184 205 177 212 0.80 3 13 0.13 6.2e+02 1.3 0.0 22 43 208 229 205 234 0.89 4 13 0.00075 3.5 8.4 0.0 21 52 235 266 228 271 0.90 5 13 0.11 5e+02 1.5 0.0 23 44 265 286 260 296 0.81 6 13 0.13 6.2e+02 1.3 0.0 23 46 293 316 284 322 0.86 7 13 0.005 23 5.8 0.0 21 52 319 350 315 352 0.83 8 13 0.091 4.3e+02 1.8 0.0 23 47 349 373 346 378 0.85 9 13 0.0022 10 6.9 0.1 21 52 375 406 371 408 0.87 10 13 0.097 4.5e+02 1.7 0.0 23 44 405 426 402 434 0.84 11 13 0.011 49 4.8 0.0 21 52 431 462 429 464 0.82 12 13 0.013 61 4.5 0.0 21 43 459 481 455 486 0.90 13 13 0.0011 5 8.0 0.0 21 46 487 512 484 520 0.88
Sequence Information
- Coding Sequence
- ATGGATTCCACAAGATTTGATCTACAAAATATTGAACAGACAGTGGTTACAACAGAGCAAACTTCAAATTCGGCATTTGTACCAAAAAAGAAAGTGTTAATAACTCTTAAAGATAGCAAAAATTATGACCTggataataatataaacattccATTGCAACCTTATCAGAGACTGTTACCACCTCCACCACCTCCTCCACATCTATTGCCGGATCACCATACTTCTGAAGTTCCTTGTCCATGCCGTGATTGTTTTCCGAGTAACATTGGACTTAACATTGTTACGCATACAAGACATAGTATTACTTCAAATGGCATTGGCATACACATGTGTTGGGCATGTGGGGAAGGCTTTTCGGACCTTCATATGTTGAAAGAACACATACTCATTCACACAGGACATAATGCTAACGAAAAAAGTGGTGTACAAATGATCGAAAAGCAGAATTGTGAAGAAAAACCACATATTTGCAATGTTTGTGGTAAAACTTTTACTCTGCAGGGAAGTTTAAGCAAGCATGAAGAAATACATAATGGACAAAAAGTCTATGTGTGTACTATTTGTAGTAAGACTTTTAACCAGCAAGGAAACTTGCATAAGCACGAAATGATTCACACAGGACAAAAACCTCATATTTGTAAAGTATGTGGTAAGGGCTTTTCTCAACAAGGTAATCTGCAGAAACATGGTGCAGTACACACAGGAGAGAAGCCACATGCATGTGGAATATGTGGTAAAAGTTTCAACCAGTTAGGTAATTTGCATAAACATGAAGTTATTCATAGTGGTGCTAAACCCCATATTTGCGGTGTTTGTGGGAAAGGTTTCAGTCAACAAGGAAATCTGCACAAACATGAATTCATTCACACCGGACTGAAACCATATGTTTGCAAACTTTGTGGTAAAGGTTTTACTCAACAAGGCAATCTTAAAAAACATGAAGCAATACACACTGGAGAGAAGCCTTATTCGTGTGGTGTTTGTGGCAAATGCTTCTCTCAAGAGGGTAACTTGCACAAACATGAAGTTATACATACAGGAATGAAACCACATGTCTGCAAGTTGTGTGGGAAAGGCTTTACACAACAAGGAAACTTAACAAAACACATGGTTATTCACAGTGGCGAGAAACCATTTGCATGCCGAATATGTGGTAAGAGATTTACTCAGCAAGGAAATTTACAGAAACATCAAATTCTACACACTGGACTGAAACCACACATATGTAAGGTGTGTGGGAAAAGTTTCACACAACAAGGAAACCTGCACAAACATGAGGTGATACATACAGGAGAGAAACCATTTGTTTGTAGAGTTTGTGGGAAGCATTTCACTCAGAGAGGTAATTTAAAGAAACATGAGGTTATTCACAGTGGGGAAAAGCCTCATGTCTGTAGAGTATGTGGCAAAGCTTTTACACAGCAAGGTAATTTGCATAAACATGAGGTTATTCACACAGGTGAAAAACCATATAGTTGTAATATTTGTGATAAAAGTTTTTCTCAGCAAGGAAACTTGAAAAAACATGAGGCACTTCATCTAGGTGAAAAATCCCATGTTTGTGGTGTTTGTGGTAAAGAATTCTCactattagcaaatttaaataagcaTGCAGCTTTTCATACTGGGTTAACTGTGTTTGGTTGGTGA
- Protein Sequence
- MDSTRFDLQNIEQTVVTTEQTSNSAFVPKKKVLITLKDSKNYDLDNNINIPLQPYQRLLPPPPPPPHLLPDHHTSEVPCPCRDCFPSNIGLNIVTHTRHSITSNGIGIHMCWACGEGFSDLHMLKEHILIHTGHNANEKSGVQMIEKQNCEEKPHICNVCGKTFTLQGSLSKHEEIHNGQKVYVCTICSKTFNQQGNLHKHEMIHTGQKPHICKVCGKGFSQQGNLQKHGAVHTGEKPHACGICGKSFNQLGNLHKHEVIHSGAKPHICGVCGKGFSQQGNLHKHEFIHTGLKPYVCKLCGKGFTQQGNLKKHEAIHTGEKPYSCGVCGKCFSQEGNLHKHEVIHTGMKPHVCKLCGKGFTQQGNLTKHMVIHSGEKPFACRICGKRFTQQGNLQKHQILHTGLKPHICKVCGKSFTQQGNLHKHEVIHTGEKPFVCRVCGKHFTQRGNLKKHEVIHSGEKPHVCRVCGKAFTQQGNLHKHEVIHTGEKPYSCNICDKSFSQQGNLKKHEALHLGEKSHVCGVCGKEFSLLANLNKHAAFHTGLTVFGW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00210003;
- 90% Identity
- iTF_00210003;
- 80% Identity
- iTF_00210003;