Bger000874.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Blattella germanica
Gene Symbol
L
Assembly
GCA_003018175.1
Location
PYGN01000905.1:57307-553156[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 1.2e-05 0.00068 20.6 1.0 1 23 180 202 180 202 0.98
2 24 0.56 32 5.9 5.9 1 23 208 230 208 230 0.98
3 24 2.8e-06 0.00016 22.5 4.3 1 23 236 258 236 258 0.99
4 24 4.8e-05 0.0027 18.7 0.2 1 23 264 286 264 286 0.98
5 24 2.5e-05 0.0015 19.5 0.2 1 23 321 344 321 344 0.98
6 24 0.092 5.3 8.3 0.1 1 23 449 472 449 472 0.91
7 24 0.52 30 6.0 0.1 3 23 490 511 488 511 0.93
8 24 0.96 55 5.1 0.3 3 23 576 596 575 596 0.98
9 24 3.9 2.3e+02 3.2 1.6 2 13 637 648 636 661 0.80
10 24 0.11 6.6 8.0 0.1 3 23 671 692 669 692 0.93
11 24 0.055 3.1 9.0 0.3 1 23 697 720 697 720 0.92
12 24 0.042 2.4 9.4 4.4 1 23 798 820 798 821 0.95
13 24 0.0081 0.47 11.6 4.6 2 23 933 954 932 954 0.96
14 24 0.15 8.6 7.7 0.5 1 23 964 986 964 986 0.97
15 24 0.68 39 5.6 0.7 2 23 994 1015 993 1015 0.96
16 24 0.00035 0.02 16.0 0.1 1 23 1146 1169 1146 1169 0.95
17 24 0.35 20 6.5 0.3 1 23 1173 1195 1173 1195 0.97
18 24 0.8 46 5.4 0.9 1 23 1203 1225 1203 1225 0.96
19 24 0.011 0.65 11.2 0.1 1 23 1233 1255 1233 1255 0.98
20 24 3.1 1.8e+02 3.5 1.7 1 23 1262 1284 1262 1284 0.94
21 24 0.00027 0.016 16.3 1.5 2 23 1359 1380 1358 1380 0.97
22 24 3.6e-06 0.00021 22.2 1.0 1 23 1391 1413 1391 1414 0.96
23 24 3 1.7e+02 3.6 0.0 3 23 1445 1466 1443 1466 0.92
24 24 6.7e-05 0.0039 18.2 1.7 1 23 1467 1490 1467 1490 0.98

Sequence Information

Coding Sequence
ATGCCCCCAGCGTCGGGGGGCGAGTGCTCTCCAGGGCCCGCCGCCCCAACGCCGCCCCCGCCCAACGGCGACTCTGCCGCCTCCGGAAACCTCAAAGGTGAGGAGGAGGACGAGGAGGACAAGGCTCCTCCGGATCTTGGTCAAGCAGCGGGAGCCCCTCATTATGACGTCAGCCTGGAAGGACTGCAGTTGGCGTTGATGGATCGCCACAACTTTGCGGACGGCAACCCAAGTCTGTCGGAGGCGTTCTTGGGCGCGGGCGCCGGCAATGGGGATGCAGCGACGTCCTCGCGTCTCCTCAGCCCTCCCCCCGCTAACTCTTCAGCTGCTGGTGGCGCCTCTTCCGTCGTCGCGGGAGAAGCTGACAACAGCCTCGAGTCCGAAGCTCTCGGGACGGACCCGGGGTCGTCGTGGCGCTCGGAGACGCCGGAAGACCAGACGTCGCCCTCCCCCAGCTCGTGTGCCACCCCCAACTCCGCCACGGACGTGCCCGACGCCGAACTCACTTTCACCGTCGGAGTGACGGAGGGGACGCCCTACGCCTGCCAGTTCTGCGACAAGGCGTTCCCCAGGCTCAGCTATCTCAAGAAACATGAGCAGACGCATAGTGACCAGATGCCCTTCCGCTGCGAGTTCTGCAGTCGCCTCTTCAAGCACAAGAGGAGTCGGGACCGGCACATCAAACTGCACACTGGCGACAAAAAGTACAGGTGCACCCACTGCGAGGCTGCCTTCTCCAGGAGCGATCACCTGAAGATCCACATGAAGACCCACGACAACCAGAAGCCCTTCCAGTGCACGGTCTGCAACAGAGGCTACAACACGGCCGCGGCTCTGACGTCACACATGCAGAACCACAAGAAGGACCAGCAACAGCAGCAACAGAACGGacacaacaacagcaacagcagcCGCGCCAGCAGCAACAACACCCCCAGCCCTGGCTCTGCTATCCCTTCCTTCAGGTGCCTCCAGTGCGGCGAAACCTTCCGCAAACCCGAGGAGCTGCAGGGTCACATGATTACGCAGCACAACGTGGAGACTGGAGGATCGCCCAGAGGACTGCTCGGGGGCCTGATGCTGGGGGACTCGCCCCTCACAAGATCTCCCTCCCGGCCTCTGCCGTTCCCCACACCCAAACTAGCGTGCATCTACTGCACCAAGGACAGCTTCAACACCATGGAGGCCCTCCAGTTACACGTCCAAGCCATGCATGGTTCGATATTGAACGGCGACCTGCGGGAGTTCGCGAGCCCGAGCCTGACGCCTCACCACCTGCTGACGTCACCGCCCTCCTCCGGCAACAACAACCACACCGTGACGTCGACCGCTGCGCTGATGCCTTACTCCTGCGACTTGTGCACGATGCGGTTCGGAACCGTCCAGGGCCTCCAGAAGCACGCGCTGGCCGTGCACGGGCTGATGGGTGGGGGCGGCGACTCGGGGGCGGCGAGCCCGGGCCTCTTCTGCGTCCAGTGCTCGCTGTCCTTCCCCTCGGCCGCTCTTTTCGCCGAGCACTATATGCTGTTGCACGGCTCAGCATCGGCGATGCCTTCCGCGCCTGCCCCAGAGCAGCTCAAACCCACGGACCTCAGCAAGAAAGCCGCCGCTCCGCACCGAGGACCGCACCACGACGATCGGTCGCCCTCCGCCAAGCGCCACAAGTCCTCCGACGCGGACGTGTCCTTGCAGGTGAACCAGTACGAGCACCCCGGCACCCTCCTCTGCAACCAATGCAGCGCAGCCCTTCCGGACTTCGAGTCGTTCCGGACGCACCTCAAGTCGCACCTGGAAGAAGCCGGGGGCCTCCGGGGGCTGCTGGGGGGAGGCGGCGACCTCATGGGGATGCTCTCGAGCCCAGAGACTACTCGCAAGAGCCCAGCAGCGGCGGCGTCTTCCGGGGCCCTCATCTGCCCCCACTGCGGGGCCAAGTTCTCCGGAGCAGACGAGCACCAAGCCTTCGAGCAGCACATCACCACTCACTTCATGGCCACGGCCACCGAGTACGGCTGTCAGAGCTGTCTCAAGCTGTTCCCCAAACCCGACGAGCTGCAGAAGCATCTCATGGATATTCATGCACACCACCTCTACCGCTGCTCCTTGTGCAAGGAAATGTTCGACTCCAAAGTTGCCATTCAGGTTCACTTTGCGGTGAAACACAGCAACGAGTGCAAGTTGTTCAGGTGTACCGCCTGTACTTCAGCCACGGCCATGTTCCGTTCAGAATTGGACTTTGGCCTCCACGTGAGGTCTGTGCATGCCCCTGTCCCTCTGCTCACGGGGGCGGCCACCAAGGCCCCGGCCCAGCAGCCGTTTCGATGCCTCTTCTGTCGTCTCAGCTTCGCCACGGAACTTGAGATGCAGTTCCACCTGGCGGCGCACTCGAAGCAGTTCCACTGCCCTCTGTGTCAGGAAGCTTTCCACGTTGAGTTCCTCCTGGACAAACACATGCAGACGCACCACAGTTCTCAGGTAATGAACAGCAACGGAGCCAGTTCGGCCGAGAACCTGACCCAGCAACAGAAATCCCCAAAGAGCAAATCTTCTGGCGTCCCACCATCTTCGACAGCTCTTACAAACAGCAACAACTCGTCGATATCTAGCGGCAGCACTGGGCGCAATAGCACCAACAACATTGAAAACAGCAGCGGCAAGAAAGGCGACCAAGCGAATGGCAACTGTTGCTGCGACATCTGCGACCGATGCGACTTTGGCAGCGAAGCCGAACTCGTGGCACATCGCAAGTTGGTGCATCACATCAAGCCCAGCACTGGCAAAAATGGCGCCGTGAGCCTTCACTGTGCTTATTGTAGCGAGAACTGTAAGTCTCGAACCGAACTGGAAAACCACATGAAAACGCACTCACAGGGCAGCAGTGGCTCGGGAAAACACAAGTGCAACATTTGCGACGAACTGTGTCCCTCGGCCGCGGTGCTCGCGGAACACAAGCTCACGCACTGCAAAGTTATCTCCGGGAGCACCTGTACGCAGTGCAAAGCGACGCTCGTCAGCGAGGAACAGTTCTACACGCATCTACAACAACACGGTGCTAACAATAACAATTCTAGTTCTAGTGCTCAAGGAAACGCCAACAGTGCTCATCAGCAAGTGGTGTTGCCGACTCCTTGCGTCGTTTGCAGACAAACTCTCATCTCCGACATAGAAGTGAGGATGCATGCAAGGTTTCATCTGAAGAACTCCGCTGCGTTGACGGCCACCGAACCCATGTACCAATGTTGTTTGTGCTTGAAGCAGTTTGAGATGCAGAACCTTATCATTGCAGGTGGAAACAATGGGGCTGTGCCTAGCATCCAGGGCGCAACTTACATTTGCAAAGACTGCTACCACTGCCACAGCAAGTCTTCGCCCCCTCAGGCTCAGCAGCCCCTGCCACAGACCTCCCAACAGCAACAGTTTGCTTCGCAAGAGCAGGTCTTTCGGTGCTCGGAGTGCCAAGTGAAGTTCGAGAACAGTTCCGCTCTTGAGGCCCATCTTGTTTCTGTTCATCGGAAGACCTACCAATGCATCAAATGCCAGATGAGTTTTGAGACGGAGCGAGAGATACAGATGCATGTGGCCACTCATCTATTAACCGAAGGAAGCAGTCACGAGTGTCACTTGTGTCGTCGGCTCTTGGCCACTCCTCTCAAACTCCAAGCCCATCTCATTGAACACACGTTTGCCGGTTGCGGAAGCTACACTTGCTACCTGTGCAGTGCCGTGTTCACTGCGGCGCAGGGCCTTCAACAGCACATGCTGGAACATGGATTGGCTGCGAGGCCTTACGACTGCTCTCGATGCAGCCTGCGCTTCTTTTTCCGTGCAGAATTGGATAATCATAGTTACAGTCACTCCGACGAGAGTAACGCGGCTATGGGTAACCCTCCATCACTGCTGCTTGACGGAACCGACTTGGCAAACAAGGCCTTGTACTACCACCATCTCAGCTCCAATGGAAGTTACGAAGCAGCCAACCCAGACATGCATTATTACAAAACACTGGTCCAAGAATCTTCGAAGCAGCAGAAACATAAAAACAGCAAGGGCCATGGCAGCAAAGGGACCGCCATGTTGAAGTGTTTGGAGTGCAACAAAGAATTCAGCAGCCTCATGGGGTTGCAAGCGCACCAGAGGCATCACAAACATTCGTCGAGCTCAAGCAAAAAAGTCTACACGTGCAACGAATGTGGCAAAGAGTTTGGAATGGCCAGAAACCTCAGCGTCCACATGCGATCTCACCACGAAGATCACGGAGGGGATGAGCGGTCCTCCGAAGACATGAACCTGGAGCTGGAAGAGCATTACCAAACCGAGGGCAAGAGCGGGCAAATCTGTCCGGTCTGTCGTAGAGATTTCTTGGACGTGGAATCGCTCGAAAGTCACGTCGCGTCGCAGCATTATCGATGCTCGCACTGCGGCGAAGCATTTGCGAGACAAAGGCATGTTGCAGATCACGTCAGGAAGGTCCATGCGATGGAAGAAGATCCGTACATTGCAGGAGACCAAGTCACAGGAAACATGGAGTTGAAACAGGAACCAGTGACCATTAAGGAAGAGAACGAAGAGGAGAACATCGACGTGTCATCGCTAACACCGGTCGCAGATCAGCAGTACGTCGGCTCGCCCCTCGGCGAGCAAGCAGAAACAAATGCTCAAGGCAACGGCAGTCACCCTTCTTCACCGACCGTCTCTCATGCTCAACACGGTGGCAGCGGCAATAACGACGATGCTCAGAGTTCGTCTTCGACGCCACTCCCAGAGAACACAATCCCAGCCTAG
Protein Sequence
MPPASGGECSPGPAAPTPPPPNGDSAASGNLKGEEEDEEDKAPPDLGQAAGAPHYDVSLEGLQLALMDRHNFADGNPSLSEAFLGAGAGNGDAATSSRLLSPPPANSSAAGGASSVVAGEADNSLESEALGTDPGSSWRSETPEDQTSPSPSSCATPNSATDVPDAELTFTVGVTEGTPYACQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHIKLHTGDKKYRCTHCEAAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQNHKKDQQQQQQNGHNNSNSSRASSNNTPSPGSAIPSFRCLQCGETFRKPEELQGHMITQHNVETGGSPRGLLGGLMLGDSPLTRSPSRPLPFPTPKLACIYCTKDSFNTMEALQLHVQAMHGSILNGDLREFASPSLTPHHLLTSPPSSGNNNHTVTSTAALMPYSCDLCTMRFGTVQGLQKHALAVHGLMGGGGDSGAASPGLFCVQCSLSFPSAALFAEHYMLLHGSASAMPSAPAPEQLKPTDLSKKAAAPHRGPHHDDRSPSAKRHKSSDADVSLQVNQYEHPGTLLCNQCSAALPDFESFRTHLKSHLEEAGGLRGLLGGGGDLMGMLSSPETTRKSPAAAASSGALICPHCGAKFSGADEHQAFEQHITTHFMATATEYGCQSCLKLFPKPDELQKHLMDIHAHHLYRCSLCKEMFDSKVAIQVHFAVKHSNECKLFRCTACTSATAMFRSELDFGLHVRSVHAPVPLLTGAATKAPAQQPFRCLFCRLSFATELEMQFHLAAHSKQFHCPLCQEAFHVEFLLDKHMQTHHSSQVMNSNGASSAENLTQQQKSPKSKSSGVPPSSTALTNSNNSSISSGSTGRNSTNNIENSSGKKGDQANGNCCCDICDRCDFGSEAELVAHRKLVHHIKPSTGKNGAVSLHCAYCSENCKSRTELENHMKTHSQGSSGSGKHKCNICDELCPSAAVLAEHKLTHCKVISGSTCTQCKATLVSEEQFYTHLQQHGANNNNSSSSAQGNANSAHQQVVLPTPCVVCRQTLISDIEVRMHARFHLKNSAALTATEPMYQCCLCLKQFEMQNLIIAGGNNGAVPSIQGATYICKDCYHCHSKSSPPQAQQPLPQTSQQQQFASQEQVFRCSECQVKFENSSALEAHLVSVHRKTYQCIKCQMSFETEREIQMHVATHLLTEGSSHECHLCRRLLATPLKLQAHLIEHTFAGCGSYTCYLCSAVFTAAQGLQQHMLEHGLAARPYDCSRCSLRFFFRAELDNHSYSHSDESNAAMGNPPSLLLDGTDLANKALYYHHLSSNGSYEAANPDMHYYKTLVQESSKQQKHKNSKGHGSKGTAMLKCLECNKEFSSLMGLQAHQRHHKHSSSSSKKVYTCNECGKEFGMARNLSVHMRSHHEDHGGDERSSEDMNLELEEHYQTEGKSGQICPVCRRDFLDVESLESHVASQHYRCSHCGEAFARQRHVADHVRKVHAMEEDPYIAGDQVTGNMELKQEPVTIKEENEEENIDVSSLTPVADQQYVGSPLGEQAETNAQGNGSHPSSPTVSHAQHGGSGNNDDAQSSSSTPLPENTIPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00210185;
90% Identity
iTF_00210185;
80% Identity
iTF_00210185;