Bger024150.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Blattella germanica
Gene Symbol
-
Assembly
GCA_003018175.1
Location
PYGN01002481.1:1-26961[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 0.0069 0.4 11.9 1.3 1 23 352 374 352 374 0.94
2 23 0.012 0.66 11.2 4.2 2 23 382 403 381 403 0.96
3 23 0.00024 0.014 16.4 0.7 2 23 410 431 409 431 0.95
4 23 0.054 3.1 9.1 0.4 2 23 438 460 437 460 0.94
5 23 0.0075 0.43 11.8 2.4 3 23 563 583 562 583 0.97
6 23 0.0014 0.08 14.1 3.6 1 23 590 612 590 612 0.96
7 23 5.7 3.3e+02 2.7 0.3 1 8 618 625 618 628 0.90
8 23 0.00032 0.018 16.1 2.1 3 23 661 682 660 682 0.96
9 23 0.0041 0.23 12.6 0.1 1 23 770 792 770 792 0.96
10 23 0.11 6.2 8.1 0.0 1 23 799 821 799 821 0.97
11 23 0.0009 0.052 14.7 2.9 3 23 829 849 829 849 0.99
12 23 0.0014 0.081 14.0 0.6 1 23 855 877 855 877 0.95
13 23 0.014 0.83 10.9 0.4 1 18 1011 1028 1011 1028 0.94
14 23 0.042 2.4 9.4 2.7 1 23 1040 1062 1040 1062 0.97
15 23 0.072 4.1 8.7 2.8 1 23 1068 1091 1068 1091 0.88
16 23 0.19 11 7.3 0.8 1 23 1155 1178 1155 1178 0.95
17 23 0.003 0.17 13.0 3.6 1 23 1185 1207 1185 1207 0.96
18 23 0.014 0.79 10.9 1.0 1 23 1213 1235 1213 1235 0.97
19 23 0.0001 0.0058 17.6 2.6 1 23 1371 1394 1371 1394 0.97
20 23 7.7 4.4e+02 2.3 0.3 1 12 1464 1475 1464 1485 0.72
21 23 0.0058 0.33 12.1 0.7 1 23 1492 1514 1492 1514 0.95
22 23 0.4 23 6.3 4.8 1 20 1520 1538 1520 1540 0.87
23 23 0.015 0.86 10.8 2.6 1 22 1546 1567 1546 1569 0.90

Sequence Information

Coding Sequence
ATGAACATACGCAGTACTGGAGACTATTGTGAAAATGTTTTTGAATCCAAAGTGCCTGGAGGAAGAGTCAAAGACTTCAAACACTACAATGCAGAGGATTGTACAGACACACAAATGGTACTAATAATGGATCCTTCACAAAGTGAAGATCAGCTCTTTGATAGAAGCAATGATGATGAGGATCCTCTAGCGGATCCTTTAGCACTTCCTGAAATAAAGGCAGAACCTCTGGGAATAATGCCTGTTGTTAAGCAAGAAATTGACAATGTCGAACCTCCTAATCAATCACTGAATACAGATGAGTATAGTAACTCTCAGCAAGATATGCAACATGAATCTAATTTTGTTGAAGTACACATGCCTGCTGTTAAGCAAGAAATTGACAATGTAGAACCAGCTAACCAAGTAGGAAATGCACATGAGTTGAGTAACTCTCAGCAAGATATGCAACATGCATCTAATTTTCTTGAAGTACACATGCCTGCTGTTAAGCTAGAAATTGACAATGTAGAACCAGCTAACCAAGTAGGAAATGCACATGAGTTCAGTAACTCTCAGCAAGATATGCAACATGGatctaattttattACATGCAGTGATAGTAATACCAGTAATACTTACGAAGAGAATTTGGATGTTGATGGTCAGGTGAGCAATagagttttatataatataactGAAAGTAATCCAGCAAAAAACAATGTTCATACAAGTTGGCAGGATATTCAAGAGAAAACTGATATAATTAATAAAGGTTTGTCTGTGTCTAATAATCAGACTtcagaatttgaaaatttatcaaCAGTTAATAAAACGTCAGTAAACCCTGTCGTGGATACTGCAAGAACAGAACCATTGTTAATTAAGGAAGAACATGATAATAGAAGTTACTCCAAAGAATTAACATCTAGCCAAATTGTACATCAAACCAATACACCAACAACTGATTTGTTTGTGGTAACAAAGAATGAATTGTCTTTAGAAGAAACAGCTGTGAATTCTGATATTAGGTGGTCTAATAATAGGGAAACACATTCCGATCTTGACAAATCATACATTTGTATTATATGTAGTGAAAAGTTTTCTAAATGTAAACAACTAAATGCACATATTATAACACACACATCAGAAAGTGAACCACTCTATTGCCCGGTATGTTATAAAGCTTTCTCTAAGAAGAATTGTCTTTTGAATCATCTCTGTTTACACACAGGATTTTGGCCATTATATTGTTACTGGTGTGGAAAAGGATTTATTAGAAAAAGTGGTCTTAGAATACATCTTCATGAACATGAAGAAATATATCAAAAAACTTGCCCAGTCTGTAAAACATCTTTTATGAATGGTCGTGAGTTTGAAGATCACATTTTAAATAGTCATGGATTTGAAGATAGTGAATTAACATCAGAAACAACAAGAATTGCAAGTAGCAATAGCAATCCAGGGTTTGGAGAATCATcatttcagaatgaaatgatgCCTGATGCGAATGGCTTATTGAAAGGAACAGAGAATGGAAGATATACCGGTACTCCAAGTGAAAAAAATCCAATTCTTCGAGCTGCTATTACAGGGGAGATCCAGAAAGAGACAAGTAAAAGAAAACGTCAAGAAGGTAGTATATCTACCATGGAGAATAATGAAAATAGACAAATGCAAATAGATACCACTAGAACTAATAATTTCTGTACTATTTGCAGTGAGAATTTCAACAATACTCATGACCTTAATACACATTTACTCAGTCATTCTTCCCAGTTTGCTCCATTTGCATGTCCTAtttgtaaaaagttatataaTCGGAAATATTATCTTTTCAAACATCTTTGTTGGCATACTGGGCATCTTTACTATTCTTGTACTGAATGTGGGAAAGGACTACCTTTAGAAGCAAAGAAGCGTAAAATTGCACAAGATCGtgcaaaagaaagaaaggaagaaaataagaaacctaaaaatatacaaaatcgtagtaatttttgtaaaatatgtaaggAAACTTTTACATCACAATATTATTACAAATCTCACATGTTGAATAATCATACAGGTATGATACCATCAGCAATGTTAACAGTTCCTCAAATTCAACAACAGCATGTGTCTCCGGAATCTCTAGCATTGCCGCAAGAAAGATCCATCTCGTTAGTACCATTTGCAGGTGGAATTCCTAGACCtacaaaagaaaatgaagatCTTTTATCACCTCTTTTGACAGGAAAGCAACAATTGCATATTCCCAATCCTTTTGTAATACAATCACTAGATGCAAGTTCATTAGGGATAAATTCTCAGCAGCAAATTGGTTTCCTCTGTCCTATCTGTAAAGTTATATTTACAGAACGAAATGATCTTAATGGACATTTGCTTACACACACATCTGCAGTCAGCCCATTCGTGTGccctctttgtcaaattttatttGCTGATATTCCTAAACTTGAAAATCATCTGCTCTTACATTCTGGAATTCATCCTCTTGGTTGTCATATATGTGGCCAGTCATTTCCCAATTCTTTTTCACTTCTTGAGCACCATCGCGAACATGCAGGTATACATGTGTATGCCTGTCATTTATGCAGTATGAAATTTTCACAAAATCAGCAGCTATTAGAACATATTGCTGCACACAAAATGCAAAATTCAGGGCTACAAGGAAATGATGTTGGCGTGCCTCCAATATCAAACTATGAAATATATCAAATTCCAGAAAGCACGGATCTAAATATCCAGATAATGAACTGTGAAAGCTTAAATACTTCCTCAAATACCGAAAATATTCCAAAAGATGCTTGTTCTGAGGTCCCTTCAGAATCAACTTTTGATGAACCTGCTTCAGAAGAGCcaacttataaaatacaaataatggaTTGTGAAAGTTTAAGTACTTCAGTGGATTCAACTAATGTTTCGATAGATACTGATCCACATGAAAAGGCAGAAGAATCAGATGAAGAAACAAATATTGGTTTATTGGAAGAGGAACAAATATTATGTTAcacattaatttttaaagaagatTCTCCCCAGTTTTCTTGTAATATCTGTAATGAGACATTTGCAAGTAGAAAGGaacttacaaaaaatataatttctcattCATTTAATGAGAATCCATTTCATTGCCCTGTTTGTAATAAAGGGCTTAGTTCAGAAACCcgtttaaaactgcatatttgtCTGCATACAGAATATCAGCCATATATTTGTCATATTTGTCAGACTGCTTTTGCCCAGAAAAAGGCTCTTAAATGTCATTATGATAACATTCACCAGCACACTAATTCTTGTGAATTATGTAATACATCCTGGTCTAATGAAGTGTTAGACTGTGAAGAACTGCCTCAAGCTGCTGACAGAGAATCTGTTGATCCTGCTGTGAAAGAAGGTACTCAGGTATTGTCTGTTAAGCCAACATATGAGCCTTGTTTCTCAGAATTTGTAAATGATGGTGTTAAATGCTATTCATGTAATTTTTGTAACGACAGTTTTACAGAGTTGAAGGATGTTACTAAACATCTGGGGATGCAACATACAAGCAAATCTAGCCCATTTGCTTGCCCAAGTTGTAATAAGACAATCAAATCAAAGTTCAATTTATTTAGGCATCTTTGCTTACATACAGGTTACAGACCATTTTCCTGTTATATTTGCAATAAACCATTCATTGGAAGGCCGTCATATGTTAATCATCTTCATATGCATGCACAAGAAGCTGCAAAGTCACAACAGAATGGTGCTAATTCAAATACTTCAAAAGATGTACAAAACAATGAAATGGATGAATCTTCAAATAATCAAACAAGTAATGATATCCATGAAAGTAATACAAGTGAATCTAACACCCAATCCATACCAATGAAAGAAACAGTGCCAGAAAATCAAATGGAGAAAAATCAAAGTGAAtcagaaaataatagtaatacatcTGCAGTGACTGTAACCTCTAAAAATAGTGAGGAACAAGCCACACCCATTGTATTAGATGATGACTCAACTGATGATCCAATATTAATTTCATCAACTTCTTCATTTACAAGTATGACTAGGTGTAATAATAAATCTGCAGGAAATACAAATAGAGCTCGACATGTGCATATATGCAAAAGGTATTCTTGTAGAATTTGCAAGAAATCATTTGCATACGAGAGTACATTTAAAATGCATATGCGTGAAAAGCATGGAATGGAGAGTGAAATTGAAAGAGATCCTATAGCAATTGATGAGGCCATGCCTTCAAATTCTTGCCAacccagaatgcaaatggtcagGTATCGCAAGATTACGTCTTCAGTTTCAACTGGTGATGGGGATATTTTCATGATGGGAAAGAAGGAATGGAAGACTTGTTTCACCGAAATTGTTACAATAGATACAAATACACGTTCATATTCCTGTAATTACTGTAATGAGATTTTACCAAGGAAACTCCGTGTATCACACTTATCTACACATTCTTCTCAGTCTAAACCATTTCCATGTCCTGTTTGTTATGAAACATTTCAGTCTAAATTTACTCTTGACAAACACATTTTTGAGCACACAAATATTAATCCATATGAATGTCACACATGTGGGAAGTTTTTTAAGAAAACTGAATTCAAGGGACATCTTTGTGATGAAGTTGAACGTCAGTTTGTTTGTAGAAAATGTAAGCAAAGTTTTAGTACAGAGACTCCTTTAAGGAAACATACATATTTTCTGCACATAAAGAATGACCCTGAAGGTTTGGCAAAATCAGAAAGTGGTGTTTCTAAAGTTTTGAATGAGAATTCTTCACGTAAGGAAAACTCAAAACCAGAAACTAATATTCAGGATACAGTTTCAAATGTTGAAACAACAGAAGTGTCAGTAACAGCCCTGTTGCAGGAACCAAATTTACATTCCGATGAAGAGTTGAATATTTCACAAGAAAAAGCAATAGATGGTGAGGAGACATTCTCAGATAAAATTGAAGCTCTTCAAACAACACCGTTGAAGGACTTGGATCCACTATCTGATGAAATTCCAGAAAATGATGCACAAGATGGAAATTCAGTTGAGAATAAGATC
Protein Sequence
MNIRSTGDYCENVFESKVPGGRVKDFKHYNAEDCTDTQMVLIMDPSQSEDQLFDRSNDDEDPLADPLALPEIKAEPLGIMPVVKQEIDNVEPPNQSLNTDEYSNSQQDMQHESNFVEVHMPAVKQEIDNVEPANQVGNAHELSNSQQDMQHASNFLEVHMPAVKLEIDNVEPANQVGNAHEFSNSQQDMQHGSNFITCSDSNTSNTYEENLDVDGQVSNRVLYNITESNPAKNNVHTSWQDIQEKTDIINKGLSVSNNQTSEFENLSTVNKTSVNPVVDTARTEPLLIKEEHDNRSYSKELTSSQIVHQTNTPTTDLFVVTKNELSLEETAVNSDIRWSNNRETHSDLDKSYICIICSEKFSKCKQLNAHIITHTSESEPLYCPVCYKAFSKKNCLLNHLCLHTGFWPLYCYWCGKGFIRKSGLRIHLHEHEEIYQKTCPVCKTSFMNGREFEDHILNSHGFEDSELTSETTRIASSNSNPGFGESSFQNEMMPDANGLLKGTENGRYTGTPSEKNPILRAAITGEIQKETSKRKRQEGSISTMENNENRQMQIDTTRTNNFCTICSENFNNTHDLNTHLLSHSSQFAPFACPICKKLYNRKYYLFKHLCWHTGHLYYSCTECGKGLPLEAKKRKIAQDRAKERKEENKKPKNIQNRSNFCKICKETFTSQYYYKSHMLNNHTGMIPSAMLTVPQIQQQHVSPESLALPQERSISLVPFAGGIPRPTKENEDLLSPLLTGKQQLHIPNPFVIQSLDASSLGINSQQQIGFLCPICKVIFTERNDLNGHLLTHTSAVSPFVCPLCQILFADIPKLENHLLLHSGIHPLGCHICGQSFPNSFSLLEHHREHAGIHVYACHLCSMKFSQNQQLLEHIAAHKMQNSGLQGNDVGVPPISNYEIYQIPESTDLNIQIMNCESLNTSSNTENIPKDACSEVPSESTFDEPASEEPTYKIQIMDCESLSTSVDSTNVSIDTDPHEKAEESDEETNIGLLEEEQILCYTLIFKEDSPQFSCNICNETFASRKELTKNIISHSFNENPFHCPVCNKGLSSETRLKLHICLHTEYQPYICHICQTAFAQKKALKCHYDNIHQHTNSCELCNTSWSNEVLDCEELPQAADRESVDPAVKEGTQVLSVKPTYEPCFSEFVNDGVKCYSCNFCNDSFTELKDVTKHLGMQHTSKSSPFACPSCNKTIKSKFNLFRHLCLHTGYRPFSCYICNKPFIGRPSYVNHLHMHAQEAAKSQQNGANSNTSKDVQNNEMDESSNNQTSNDIHESNTSESNTQSIPMKETVPENQMEKNQSESENNSNTSAVTVTSKNSEEQATPIVLDDDSTDDPILISSTSSFTSMTRCNNKSAGNTNRARHVHICKRYSCRICKKSFAYESTFKMHMREKHGMESEIERDPIAIDEAMPSNSCQPRMQMVRYRKITSSVSTGDGDIFMMGKKEWKTCFTEIVTIDTNTRSYSCNYCNEILPRKLRVSHLSTHSSQSKPFPCPVCYETFQSKFTLDKHIFEHTNINPYECHTCGKFFKKTEFKGHLCDEVERQFVCRKCKQSFSTETPLRKHTYFLHIKNDPEGLAKSESGVSKVLNENSSRKENSKPETNIQDTVSNVETTEVSVTALLQEPNLHSDEELNISQEKAIDGEETFSDKIEALQTTPLKDLDPLSDEIPENDAQDGNSVENKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00210470;
90% Identity
iTF_00210470;
80% Identity
iTF_00210470;