Basic Information

Insect: Blastobasis lacticolella
Gene Symbol: -
Assembly: GCA_905147135.1
Location: LR990067.1:2045404-2047008[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 5.3 4.9e+02 2.6 2.4 2 23 226 248 223 248 0.89

2 10 2.8e-05 0.0026 19.2 0.4 1 23 254 276 254 276 0.98

3 10 0.00022 0.02 16.4 2.9 1 23 282 305 282 305 0.97

4 10 0.0011 0.1 14.1 0.2 2 21 312 331 311 332 0.93

5 10 2.7e-06 0.00025 22.4 1.7 2 23 348 369 347 369 0.95

6 10 2.5e-06 0.00022 22.5 3.3 1 23 376 398 376 398 0.98

7 10 0.00022 0.02 16.4 0.2 1 23 404 426 404 426 0.97

8 10 8e-06 0.00073 20.9 2.1 1 23 432 454 432 454 0.96

9 10 1.6e-05 0.0015 19.9 3.1 1 23 460 482 460 482 0.98

10 10 0.0011 0.1 14.1 3.0 1 23 488 511 488 511 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	5.3	4.9e+02	2.6	2.4	2	23	226	248	223	248	0.89
2	10	2.8e-05	0.0026	19.2	0.4	1	23	254	276	254	276	0.98
3	10	0.00022	0.02	16.4	2.9	1	23	282	305	282	305	0.97
4	10	0.0011	0.1	14.1	0.2	2	21	312	331	311	332	0.93
5	10	2.7e-06	0.00025	22.4	1.7	2	23	348	369	347	369	0.95
6	10	2.5e-06	0.00022	22.5	3.3	1	23	376	398	376	398	0.98
7	10	0.00022	0.02	16.4	0.2	1	23	404	426	404	426	0.97
8	10	8e-06	0.00073	20.9	2.1	1	23	432	454	432	454	0.96
9	10	1.6e-05	0.0015	19.9	3.1	1	23	460	482	460	482	0.98
10	10	0.0011	0.1	14.1	3.0	1	23	488	511	488	511	0.94

Sequence Information

Coding Sequence: ATGTCCGACACTGAAGAGACTTATTGTCGTTTGTGCGCCGAACCTACACCGCTAACTCAACTAATATCGTCCGAGGAAGATGTGGCCATCAGTTCCAAAATAGAGACGAAAATGTTGTGGATAAACGTTGATGTTTCACCGTCAAATAAACTGCCTACAACTATTTGCTTCTCCTGCTTCGACTCGCTCGAACGAACATGGATCTTTCTGCACAACGTAAGATCGGCCCAGGAAAAATTGATCGAGATATTTGCACCCAAACTCACTCTGAATAATAAAGATTCCACTACCAAAAGCAAATCCAAAGCAGCGGCTGACGTTGGGAAACCCGTGGACAGGGACTGGGATGAGTTCCAAGAAAGCAAAGTTGAGGTTAAAAGTGATCCTGAACACCCAACGGTAAGAACTGTAGACCCTAGCACCTTTGTCGTAGATTATATCAAAACTGAGCAAGATACTGATGATGATAAGCCAGACGTTGGCATTCATAGTGATTTCAATAGCTCTGACAGTGACTTACCCTTACGCATCACCtcaaagaagaaaaaaatcaaaaagaaaaagaaaataaagtatgATTCAGAAATTTTAGAAGCCGACTTACTGAAATCCGAAATTGAGGCAGTGCCAATTGACATGGCGATTTTGAACATGACTTGGGACGATTACATGTGCCGTTGTGCCAGTTGCGATGCTCTGTGTAAGAATATAAGCTCATTGCGGTTGCATTCAATGCAAATTCATTCATGTTGCTGCGTTTTCAAATGCCCAGACTGTGGGAAAGTGATTGCGAACTTCAAAAACTTTGTTAACCATGTACGTTATCATAAGAAATTACTCAAATACTGTTGTGAATACTGCAACAAGCAATTTAGTTTGTCCGCATATGTGAAACGGCATATAAACTCTGACCATGGAGATAGTTGTCTAACTACGTGCCAGAATTGTGGGGCTTGCTTCGAGAGTGCAGAGTCCTTACAAGACCATTTACTGATGTATGCAAAGAAGGGTcgtaagaaagaaaaaaatgaagCAGACCTAAAGTGCGAAGAGTGTAATAAGGAGTTTAAATCTCGAAGCAATCTACAACAACACAAGCTGCTACACACAGAACGTGCCAGAAATTTCTCGTGCCACGTCTGTGGCAAAATGTTTTTCACAAAAGGTACTCTAAGCACGCATATGAGTACACATGATAACACGAAACCTTACAAATGTGAATTCTGCCCGATGGCTTTCAGAGCACGGGGTAACTTACAGTCCCATGTCAGTCTGCACTCTGGTGCGAAGCCGTTTGTCTGCGAACAGTGTGGAAAGTCCTTCAGAGTTAAACGTCACCTGAAATCCCATTCAATAGTGCATACAGATCTAATGCCATATGTTTGTGAATATTGTAACAAATCATTCCGCTTCAAGACTCGGCTTAACTTGCACCTCCGTCAACACACAGGAGCGAAACCGTACAACTGTATATACTGCCAAAGGGATTTCACGAACGGTTCCAACTACAAGAAGCATATGAAGCGTAGACACAACATTGATACGTCAAAACAGAGATATAACAATATTGTTGCAGAACATAGTAATGGTGAAAGTCAAACTtga
Protein Sequence: MSDTEETYCRLCAEPTPLTQLISSEEDVAISSKIETKMLWINVDVSPSNKLPTTICFSCFDSLERTWIFLHNVRSAQEKLIEIFAPKLTLNNKDSTTKSKSKAAADVGKPVDRDWDEFQESKVEVKSDPEHPTVRTVDPSTFVVDYIKTEQDTDDDKPDVGIHSDFNSSDSDLPLRITSKKKKIKKKKKIKYDSEILEADLLKSEIEAVPIDMAILNMTWDDYMCRCASCDALCKNISSLRLHSMQIHSCCCVFKCPDCGKVIANFKNFVNHVRYHKKLLKYCCEYCNKQFSLSAYVKRHINSDHGDSCLTTCQNCGACFESAESLQDHLLMYAKKGRKKEKNEADLKCEECNKEFKSRSNLQQHKLLHTERARNFSCHVCGKMFFTKGTLSTHMSTHDNTKPYKCEFCPMAFRARGNLQSHVSLHSGAKPFVCEQCGKSFRVKRHLKSHSIVHTDLMPYVCEYCNKSFRFKTRLNLHLRQHTGAKPYNCIYCQRDFTNGSNYKKHMKRRHNIDTSKQRYNNIVAEHSNGESQT*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00208154;
90% Identity: iTF_00208154;
80% Identity: -