Badu028380.1
Basic Information
- Insect
- Blastobasis adustella
- Gene Symbol
- -
- Assembly
- GCA_907269095.1
- Location
- OU026142.1:1316285-1317889[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 4.5 4.3e+02 2.6 2.4 2 23 226 248 223 248 0.89 2 10 2.4e-05 0.0023 19.2 0.4 1 23 254 276 254 276 0.98 3 10 0.00019 0.018 16.4 2.9 1 23 282 305 282 305 0.97 4 10 0.00074 0.07 14.5 0.3 2 22 312 332 311 332 0.94 5 10 2.3e-06 0.00022 22.4 1.7 2 23 348 369 347 369 0.95 6 10 2.1e-06 0.0002 22.5 3.3 1 23 376 398 376 398 0.98 7 10 0.00025 0.024 16.0 0.3 1 23 404 426 404 426 0.97 8 10 6.9e-06 0.00065 20.9 2.1 1 23 432 454 432 454 0.96 9 10 1.4e-05 0.0013 19.9 3.1 1 23 460 482 460 482 0.98 10 10 0.00097 0.092 14.1 3.0 1 23 488 511 488 511 0.94
Sequence Information
- Coding Sequence
- ATGTCCGACACCGAAGAGACTTATTGTCGTTTGTGCGCGGAACCTACACCTCTAACTCAACTGATATCGTCCGAGGAAGATGTAGCCATCAGTTCCAAAATAGAGACAAAAATGTTGTGGATAAACGTCGATGTTTCAGCGTCTAATAAACTGCCTACAACTATTTGCTTCTCCTGCTTTGACTCGCTTGAACGAACATGGATCTTTCTGCACAACGTGAGAACGGCCCAGGAAAAATTGACTGAGATATTTGCACCCAAACTCACAGTAAATAACAAAAATTCCACTAGCAAAAGCAAGTCCAAAGCAGCGGCTGACGTTGGGAAACCCGTGAACAGGGACTGGGAAGAGTTCCAGGATAGCAAAATTGAGGTTAAAAGTGATCCTGAACACCCAACGGTCAGAACTGTGGACCCTAGCACCTTTGTCGTAGATTATATCAAAACTGAGCAAGATACTGATGATGACAAGCCAGACGTTGGCATTCATAGTGATTTCAATAGCTCTGACAGTGACTTACCCTTACGCATCACCTCGAAGAAAAAAAAAATGAAAAAGAAGAAGAAAATAAAATACGATTCAGAAATTTTAGAAGCCGACTTACTGAAATCTGAAATTGAGGCAGTGCCAATTGACATGGCGATTTTGAACATGACTTGGGACGATTACATGTGCCGTTGTGCCAGTTGCGATGCTCTGTGTAAGAATATAAGCTCATTGCGGTTGCATTCTATGCAAATCCACTCATGTTGCTGTGTTTTCAAGTGCCCGGACTGCGGGAAAGTGATTGCGAACTTCAAAAACTTTGTAAACCATGTACGCTATCATAAGAAATTACTCAAATACTGTTGTGAGTACTGCAACAAGCAATTCAGTTTGTCTGCATATGTGAAACGACATATAAACTCTGACCATGGAGATAGTTGTCTAACTACATGCCAGAATTGTGGGGCTTGCTTTGAGAGTGCAGAGTCCTTACAAGACCATTTACTGACCTACGCAAAGAAGGGACGTAAGAAAGAAAAACTTGAAGCGGACCTAAAGTGCGAAGAGTGTAATAAGGAGTTTAAGTCTCGAAGCAATCTTCAACAACACAAGCTGCTACACACAGAACGTGCAAGAAATTTCTCGTGCCACGTCTGCGGCAAAATGTTCTTTACAAAAGGTACTCTAAGCACGCATATGAGTACACATGATAACACAAAACCTTTCAAATGTGAATTCTGCCCGATGGCTTTCAGAGCACGGGGTAACTTACAGTCTCATGTGAGTTTGCACTCTGGTGCTAAGCCGTTTGTCTGCGAACAGTGCGGAAAGTCCTTCAGAGTTAAACGTCACCTGAAATCACATTCAATAGTGCATACAGACCTAATGCCATATGTTTGCGAATATTGTAACAAATCATTCCGCTTCAAGACTCGTCTTAACTTACACCTCCGTCAACACACAGGAGCGAAACCGTACAACTGTATTTACTGTCAAAGGGACTTCACGAACGGTTCCAACTACAAGAAGCATATGAAGCGTAGACACAACATTGATACGTCAAAACAGAGATATAACAATATTGTTGCAGAACATAGTAATGGTGAAAGTCAAAATTGA
- Protein Sequence
- MSDTEETYCRLCAEPTPLTQLISSEEDVAISSKIETKMLWINVDVSASNKLPTTICFSCFDSLERTWIFLHNVRTAQEKLTEIFAPKLTVNNKNSTSKSKSKAAADVGKPVNRDWEEFQDSKIEVKSDPEHPTVRTVDPSTFVVDYIKTEQDTDDDKPDVGIHSDFNSSDSDLPLRITSKKKKMKKKKKIKYDSEILEADLLKSEIEAVPIDMAILNMTWDDYMCRCASCDALCKNISSLRLHSMQIHSCCCVFKCPDCGKVIANFKNFVNHVRYHKKLLKYCCEYCNKQFSLSAYVKRHINSDHGDSCLTTCQNCGACFESAESLQDHLLTYAKKGRKKEKLEADLKCEECNKEFKSRSNLQQHKLLHTERARNFSCHVCGKMFFTKGTLSTHMSTHDNTKPFKCEFCPMAFRARGNLQSHVSLHSGAKPFVCEQCGKSFRVKRHLKSHSIVHTDLMPYVCEYCNKSFRFKTRLNLHLRQHTGAKPYNCIYCQRDFTNGSNYKKHMKRRHNIDTSKQRYNNIVAEHSNGESQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00209133;
- 90% Identity
- iTF_00209133;
- 80% Identity
- -