Blac032550.1
Basic Information
- Insect
- Blastobasis lacticolella
- Gene Symbol
- -
- Assembly
- GCA_905147135.1
- Location
- LR990066.1:5515496-5518102[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.44 40 6.0 0.2 2 23 96 117 95 117 0.95 2 19 0.04 3.6 9.3 2.8 1 21 121 141 121 144 0.95 3 19 0.051 4.6 8.9 0.5 2 22 151 171 150 171 0.95 4 19 6.1 5.5e+02 2.4 0.1 1 23 178 201 178 201 0.88 5 19 0.0014 0.13 13.8 1.6 1 23 208 231 208 231 0.95 6 19 4.1e-05 0.0037 18.6 0.8 1 23 236 258 236 258 0.96 7 19 1.3e-06 0.00012 23.4 1.5 1 23 264 286 264 286 0.98 8 19 0.0085 0.77 11.4 0.7 3 23 350 371 349 371 0.98 9 19 3.8 3.5e+02 3.0 0.1 2 23 396 418 395 418 0.91 10 19 0.0037 0.34 12.5 1.2 3 23 443 463 442 463 0.97 11 19 0.00098 0.09 14.3 1.4 1 21 467 487 467 488 0.96 12 19 0.1 9.2 8.0 2.3 1 23 529 552 529 552 0.96 13 19 0.54 49 5.7 1.2 2 23 578 600 577 600 0.96 14 19 0.011 1 11.0 0.2 2 23 623 644 622 644 0.94 15 19 0.00046 0.042 15.3 0.0 1 23 648 671 648 671 0.97 16 19 0.054 5 8.8 2.1 1 23 675 698 675 698 0.97 17 19 0.89 81 5.0 0.5 1 23 703 728 703 728 0.88 18 19 0.00029 0.027 16.0 2.5 1 23 737 760 737 760 0.97 19 19 6.3e-05 0.0057 18.1 0.4 1 23 770 793 770 793 0.96
Sequence Information
- Coding Sequence
- ATGCTATGCGTTTTCTGCGGCGAGAAGAAGGAGGATATCGCCGAGCTCAGGAACCACGTGGAGGAGAAACACAAGACCTTCAACCTGAAGACCGCTTTCCACCATCTCACCCTGAAAGACTACCTCAAAGTGGACTGCACCAATATGAAGTGCAAGATATGCGAGCTACCCCACGACTCGCTCGAGAGCGTCGCGGCTCACTTGACCATCGACCACGGCTGCAAGAAGCTGGACCTCGATTACGAGATCGGCCTCCAGCCCTTCAAACTGCAGACGGGGAAGTGGACCTGTCTCATTTGCAATGAGAGCATGCCGTCCCTGGTCAAACTGTCTCGGCATACCACCTCGCACTTCCACAAGTTCACGTGCGATGCGTGCGGGAAGCAGTACATGAGCGTCGAGAACCTGAGGCACCATGTCAGGTGCAATCACCGCGAATCCGGCAACAAGGTCTGCAGGCGGTGTTGGACGGAATTCGCTACGCAATCCGAGAAACGGGAACACATGAAGACTTCGTCTCGATGCTGGGCTTATGCCTGCAGCGTTTGTTGCGAACGGTTCCCCAGCTGGGAGGTCAAGATAAGACACTTGGCCGCCGCGCACGATAAAGATGTACCAGTCTATACTTGCCCGGAATGCGGGGAGAGGTTCCAAGACCGGAAGATGTACTACCAGCACTTCAAGCTGAATCATAGTGATGATTGCTTCGTATGCCCCGTTTGTGGCGAGAAGTTCGTCACAAAGAAATGCTTGACCGAACACGTTGTTAGGCACACTGGGGAGAAACCGTTCACATGCACGGTTTGCCAAAAAAGGTTTCCGCGGAAGAAGAGTCTTCAAGTACACATGAGCATCCACGACGAAGTAAAGAGATTCCCTTGCATGGTTTGCGAGTTAAGATTGGAAATACATGGACGTAAAGACACTGAGAGTGaatcaaaaaagaaaattgtgcTTGTCTACCAGACTCCTCAGCGGCGTAACGCCGAGCTTGTACTTACCTTTTCCACGGCATACCCCTTTAAAACTAGATTTAGCCAGATTCTATGTGCTTATTGCCACGACGAATTCGACACCCTCGGCTCTCTGCGGGAGCATATGAAAACTGAACACCGGAATTCGGATTTTAAGAACGTTTTCTATAGGACGAAAGACAACTTGGTGAAAGTGGACATAACGAACATGCAATGCAAAATTTGTTCGCAAGACATGGTCGATATCAATGCGCTGATGTCGCATTTAGCTCGCGAGCATGACAAGCCTGTAAAGTTCAACGCACGCTTCGGAGTGTTGCCTTACAAGCAGGGTGATGAAAACAACTGGTTGTGCGTACATTGTCCGAAGAGTTATTCCGAGTTCGTCTCATTCAAACGCCATATAGCTAGTCACTTCATGAACTTTAGTTGCGACAAGTGCGGCACGACCTTCGTCTCCGATCATGCTCTGAGAGACCACCATCGTCAGGTCAAATGTTTCCGGACGGCGTATAAACCACGCAACGGCAAAGTCTTGAATCCTCGCACCAATGCTGAGATAATCTTGCAATGTTCCACCGCCACGCCCTTTAGAACCTGGAAGAGCAATTTCAACTGCGTCTTCTGTAGGCTACAGACGAGCAGTCCGTGCAGTCTCCGAAGCCATATGGCGACGAACCATGCCAACTACAATGTGCAAGCGGCGTTTTACAAAAAACTGGGCAAGGAGTTCCTTAAAATCGACATCACAGACCTTCAATGCAAACTATGCTTCTTGTATCTGGAGAGGTTCGATTCGCTGACGTATCATCTGAAGAAGGACCATCAGCAGCCGCTTTCTGACGACCAATTGGGAGTCTTGCCTTTCAGGCTGAACGATGGCTCCATATGGAAGTGCGTGATATGTCCGAACGAGTTCAAGGACTTCGTCTCCCTGAATAAACACACGGCGGAGCATTTTCAAAATTATGTCTGCGACACTTGCGGCGAAGGCTTCATAACCGAGTCGGCGATGGTAGCGCACACGAAAGTCCCACACGAAAACAAGTACAACTGCAGTAGATGCGTCGCCACTTTCTCCTCTTTAGACGAGAGAAATCACCACGTTAAAACACAGCATACGAGTACGCCATACATGTGCAACTATTGCAAGGAGAAGCCGCGTTTCGCCAACTGGGAGCTCAGGAAGAAACACCTGATGGATGTGCACAATTACAAAACTGGCGCGGACAAGTACGAATGCTCGACGTGTCAGAAATCCTTCAAAACGAGGTCCGGGAAGTACAACCATATGGCGCGGACGCATAGACTGAAAAAGGAGTCCGAGCTCAAGTATCCGTGCAACATTTGCCCCAAAGCGTTTACGACCAAATTGTTCTTGGACAAACACATTGCCAAAAAGCACTTTGACGTCTGA
- Protein Sequence
- MLCVFCGEKKEDIAELRNHVEEKHKTFNLKTAFHHLTLKDYLKVDCTNMKCKICELPHDSLESVAAHLTIDHGCKKLDLDYEIGLQPFKLQTGKWTCLICNESMPSLVKLSRHTTSHFHKFTCDACGKQYMSVENLRHHVRCNHRESGNKVCRRCWTEFATQSEKREHMKTSSRCWAYACSVCCERFPSWEVKIRHLAAAHDKDVPVYTCPECGERFQDRKMYYQHFKLNHSDDCFVCPVCGEKFVTKKCLTEHVVRHTGEKPFTCTVCQKRFPRKKSLQVHMSIHDEVKRFPCMVCELRLEIHGRKDTESESKKKIVLVYQTPQRRNAELVLTFSTAYPFKTRFSQILCAYCHDEFDTLGSLREHMKTEHRNSDFKNVFYRTKDNLVKVDITNMQCKICSQDMVDINALMSHLAREHDKPVKFNARFGVLPYKQGDENNWLCVHCPKSYSEFVSFKRHIASHFMNFSCDKCGTTFVSDHALRDHHRQVKCFRTAYKPRNGKVLNPRTNAEIILQCSTATPFRTWKSNFNCVFCRLQTSSPCSLRSHMATNHANYNVQAAFYKKLGKEFLKIDITDLQCKLCFLYLERFDSLTYHLKKDHQQPLSDDQLGVLPFRLNDGSIWKCVICPNEFKDFVSLNKHTAEHFQNYVCDTCGEGFITESAMVAHTKVPHENKYNCSRCVATFSSLDERNHHVKTQHTSTPYMCNYCKEKPRFANWELRKKHLMDVHNYKTGADKYECSTCQKSFKTRSGKYNHMARTHRLKKESELKYPCNICPKAFTTKLFLDKHIAKKHFDV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00208157;
- 90% Identity
- iTF_00208157;
- 80% Identity
- -