Badu017375.1
Basic Information
- Insect
- Blastobasis adustella
- Gene Symbol
- -
- Assembly
- GCA_907269095.1
- Location
- OU026141.1:5558325-5561856[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.4 38 5.9 0.2 2 23 135 156 134 156 0.95 2 18 0.034 3.2 9.2 2.8 1 21 160 180 160 183 0.95 3 18 0.24 23 6.6 0.4 2 22 190 210 189 210 0.95 4 18 0.47 44 5.7 0.2 1 23 217 240 217 240 0.92 5 18 0.0013 0.12 13.7 1.6 1 23 247 270 247 270 0.95 6 18 3.9e-05 0.0037 18.5 0.8 1 23 275 297 275 297 0.96 7 18 2e-06 0.00019 22.6 0.9 1 23 303 325 303 325 0.97 8 18 0.0076 0.72 11.3 0.7 3 23 389 410 388 410 0.98 9 18 0.0034 0.32 12.4 1.2 3 23 482 502 481 502 0.97 10 18 0.00089 0.084 14.2 1.4 1 21 506 526 506 527 0.96 11 18 0.17 16 7.0 3.2 1 23 568 591 568 591 0.96 12 18 0.49 46 5.6 1.2 2 23 617 639 616 639 0.96 13 18 0.01 0.95 10.9 0.2 2 23 662 683 661 683 0.94 14 18 0.00042 0.039 15.3 0.0 1 23 687 710 687 710 0.97 15 18 0.049 4.6 8.7 2.1 1 23 714 737 714 737 0.97 16 18 1 94 4.6 0.5 1 23 742 767 742 767 0.92 17 18 0.00026 0.025 15.9 2.5 1 23 776 799 776 799 0.97 18 18 5.7e-05 0.0054 18.0 0.4 1 23 809 832 809 832 0.96
Sequence Information
- Coding Sequence
- ATGGAGTCGGCAGAAACTGAATCGCCGGTGGTGCAGCGATTGCGCAGGGCTAGAAAGAACGCAGAAATTGTCTTGCGCTGCACCTCTGTGTGCCCGTTCAGGCTCTACAGCCACCACATGCTATGCGTTTTCTGCGGCGAGAGGAAGGAGGATATCGCCGAGCTCAGGAACCACGTGGAGGAGAAACACAAGACCTTCAACCTGAAGACCGCTTTCCACCATCTCACCCTGAAAGACTATCTCAAAGTCGACTGCACCAATATGAAGTGCAAGATATGCGAGCTACCCCACGACTCGCTCGAGAGCGTAGCGGCTCACCTGACCATCGACCACGGCTGCAAGAAGCTGGACCTCGATTACGAGATCGGCCTCCAGCCGTTCAAACTGCAGACGGGGAAGTGGACCTGTCTCATTTGCAATGAGAGCATGCCGTCCCTGGTCAAACTGTCTCGGCATACTACTTCGCACTTCCACAAGTTCACGTGTGAGGCGTGCGGGAAGCAGTACATGAGTGTGGAAAACCTGAGGCACCATGTCAGGTGCAATCACCGCGAGTCCGGCAACAAGGTCTGCAGGCGATGTTGGACGGAATTCACTAATGAAGCGGAGAAGCGGGAACACATGAAGACTTCGTCTCGATGCTGGGCTTATGCCTGCAGCGTTTGCTGCGAACGGTTCCCCAGTTGGGAGAGTAAGATAAGACACTTGGCCGCCGCGCACGATAAAGACGTACCGGTCTATACTTGCCCGGAATGCGGGGAGAGGTTCCAAGACCGGAAGATGTACTACCAGCACTTTAAGCTGAATCATAGTGATGATTGCTTCGTGTGCCCCGTCTGTGGCGAGAAGTTCGTCACGAAGAAATGCCTGAACGAACACGTTGTTAGGCACACTGGGGAGAAACCATTCATATGCACGGTTTGCCAAAAAAGGTTTCCGAGGAAGAAGAGTCTTCAGGTGCACATGAGCATCCACGACGAAGTAAAGAGATTCCCTTGCATGGTGTGCGAGTTAAGATTGGAAATACATGGACGTAAAGACACTGAGAGTGAATCAAAAAAGAAAATTGTGCTTGTCTACCAGACTCCTCAACGGCGTAACGCCGAGCTTGTACTCACGTTTTCCACGGCATACCCCTTTAAAACTAGATTTAGCCAGATTTTATGCGCTTATTGCCACGACGAATTCGACACCCTTGGCTCTCTGCGGGAGCATATGAAAACTGAACACCTTAATTCGGATTTTAGAAACGTTTTCTATAGGACTAAAGACAACTTGGTGAAAGTGGACATAACGAACATGAAATGCAAAATTTGTTTACAAGACATGGTCGATATCAATGCGCTGATGTCGCATTTAGCTCGTGAGCACGACAAGCCAGTCAAATTCAACGCACGCTTTGGAGTGTTGCCTTACAAGCAGGGTGATGAAAACAACTGGTTGTGCGTACATTGTCCGAAGAGTTATTCCGAGTTCGTCTCATTTAAACGCCATATAGCTAGTCACTTCATGAACTTTAGTTGCGACAAGTGCGGCACGACCTTTGTCTCCGATCATGCTCTGAGAGACCACCATCGTCAGGTAAAATGTTTCCGGACGGCATATAAACCACGCAACGGCAAAGTCTTGAATCCTCGCACCAATGCAGAGATAATCTTGCAATGCTCTACCGCCACGCCCTTTAGAACCTGGAAGAGTAATTTCAACTGCGTCTTCTGTAGGCTACAGACGAGCAGTCCGTGCAGTCTCCGCAGCCATATGACGACAAACCATGCTAACTACAATGTGCAAGCGGCGTTTTACAAAAAACTGGGCAAGGAGTTCCTTAAAATCGACATCACAGACCTTCAATGCAAACTGTGCTTCTTGTATCTAGAGAGGTTCGACTCGCTGACGTACCATTTGAAGAAGGACCATCAGCAGCCGCTTTCTGACGACCAATTGGGAGTCTTACCTTTCAGGCTGAACGATGGCTCCATATGGAAGTGCGTGATATGTCCGAACGAGTTCAAGGACTTTGTCTCCCTGAATAAACACACGGCGGAGCATTTTCAAAACTATGTCTGCGACACTTGCGGCGAGGGCTTTATAACCGAGTCTGCGATGGTAGCGCACACGAAAGTCCCGCACGAAAACAAGTACAACTGCAGTAGATGCGTCGCCACTTTCTCCTCCCTGGACGAGAGAAATCACCACGTCAAAACACAGCATACAAGCACGCCATACATGTGCAACTATTGCAAGGATAAGCCGCGTTTCGCCAACTGGGAGCTCAGGAAGAAACACCTGATGGATGTCCACAACTACAAAACAGGAGCGGACAAGTACGAATGCTCGACGTGTCAGAAATCCTTCAAAACGAGGTCCGGGAAGTACAACCATATGGCGCGCACGCATAGACTGAAAAAGGAGTCCGAGCTCAAGTATCCGTGCAACATTTGCCCCAAAGCGTTCACGACCAAATTGTTCTTGGACAAACACATTGCCAAAAAGCACTTTGACGTCTGA
- Protein Sequence
- MESAETESPVVQRLRRARKNAEIVLRCTSVCPFRLYSHHMLCVFCGERKEDIAELRNHVEEKHKTFNLKTAFHHLTLKDYLKVDCTNMKCKICELPHDSLESVAAHLTIDHGCKKLDLDYEIGLQPFKLQTGKWTCLICNESMPSLVKLSRHTTSHFHKFTCEACGKQYMSVENLRHHVRCNHRESGNKVCRRCWTEFTNEAEKREHMKTSSRCWAYACSVCCERFPSWESKIRHLAAAHDKDVPVYTCPECGERFQDRKMYYQHFKLNHSDDCFVCPVCGEKFVTKKCLNEHVVRHTGEKPFICTVCQKRFPRKKSLQVHMSIHDEVKRFPCMVCELRLEIHGRKDTESESKKKIVLVYQTPQRRNAELVLTFSTAYPFKTRFSQILCAYCHDEFDTLGSLREHMKTEHLNSDFRNVFYRTKDNLVKVDITNMKCKICLQDMVDINALMSHLAREHDKPVKFNARFGVLPYKQGDENNWLCVHCPKSYSEFVSFKRHIASHFMNFSCDKCGTTFVSDHALRDHHRQVKCFRTAYKPRNGKVLNPRTNAEIILQCSTATPFRTWKSNFNCVFCRLQTSSPCSLRSHMTTNHANYNVQAAFYKKLGKEFLKIDITDLQCKLCFLYLERFDSLTYHLKKDHQQPLSDDQLGVLPFRLNDGSIWKCVICPNEFKDFVSLNKHTAEHFQNYVCDTCGEGFITESAMVAHTKVPHENKYNCSRCVATFSSLDERNHHVKTQHTSTPYMCNYCKDKPRFANWELRKKHLMDVHNYKTGADKYECSTCQKSFKTRSGKYNHMARTHRLKKESELKYPCNICPKAFTTKLFLDKHIAKKHFDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00209124;
- 90% Identity
- iTF_00209124;
- 80% Identity
- -