Basic Information

Insect: Blastobasis lacticolella
Gene Symbol: -
Assembly: GCA_905147135.1
Location: LR990042.1:16432673-16439659[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 5.1e-07 4.7e-05 24.6 0.1 1 23 435 457 435 457 0.99

2 8 8.8e-06 0.0008 20.8 2.9 1 23 463 485 463 485 0.98

3 8 3.4e-06 0.00031 22.0 0.3 2 23 494 515 494 515 0.98

4 8 1.1e-05 0.001 20.4 0.6 1 23 521 543 521 543 0.99

5 8 2.5e-07 2.3e-05 25.6 1.8 1 23 549 571 549 571 0.98

6 8 1.3e-05 0.0012 20.2 1.3 3 23 579 599 577 599 0.97

7 8 0.00011 0.01 17.3 7.2 1 23 605 627 605 627 0.97

8 8 0.00017 0.015 16.7 0.8 1 22 633 654 633 654 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	5.1e-07	4.7e-05	24.6	0.1	1	23	435	457	435	457	0.99
2	8	8.8e-06	0.0008	20.8	2.9	1	23	463	485	463	485	0.98
3	8	3.4e-06	0.00031	22.0	0.3	2	23	494	515	494	515	0.98
4	8	1.1e-05	0.001	20.4	0.6	1	23	521	543	521	543	0.99
5	8	2.5e-07	2.3e-05	25.6	1.8	1	23	549	571	549	571	0.98
6	8	1.3e-05	0.0012	20.2	1.3	3	23	579	599	577	599	0.97
7	8	0.00011	0.01	17.3	7.2	1	23	605	627	605	627	0.97
8	8	0.00017	0.015	16.7	0.8	1	22	633	654	633	654	0.95

Sequence Information

Coding Sequence: ATGTGTGAATGGCTTGCATGCCGGGAATGGTGCGACGTTCAGCTGCTGTGCGGCGGCCGCGCTTTTAGCGCGCACCGCGCCGTGTTGGCTAGTGCCAGTGCTTTCCTCAGGCAAATACTTCTCTCTTGCCCCACAGAAGAAGCCTCGACTTTTATCGTGTTACCAGAGTTTGACATTGAGGCGATGTCCTCCGTCCTTTACTACATTTATAATGGAGAGGTTGTAATACAAAAACAGAAACTAGGAATGTTTCTCGATATTGTAAAAGCTATGCAAATATTTGTCGACAGTCAATATTTGGCGAGAAGCGACATAGAGCATGCCGACTTCAATAAATGCCAAGACCGCGTGTGTATACAGTCGGGTGCCAGCGCGTTCTGTTTGGAAAGTGAAACGCGAAATGGTAAAAATTACGTTAATATAAAGAAAGGTGAAGCGCTTCAGGATATTTTGCGGCGATGTTCGTTCAGCGAAGGCATTCTGGACTGGCTGAAACCGCGCGAGGGTTTGGACAGTGATGACAAGTCAGCTTTCGAGGTTTTGTCGCAATTCGGAGACCGACAAAGGAGTGGTTTGCTACGTGATTTATTTATCGCGACATATCCTGAGTACGGTAACGCTAACGGTCGGTCCGCAGGCGTGctagaaataataaatgaacGCTATCGTGGACCGACATCTGTGCTCTCGACGAATGCAAATGGCAGTCATCCCGGCGCGGGCTGCGCACGCGGCGCCCTGACAACATCCCACTCCTTGAACGGACCTCCTTACATGAAAAATGAATGTCATGCAATGGAATACGGTAATTTAAACATGGAGAAGACTATGAAACAAAGAAGTACGAAATCAATTCTCGAAAGATGTCGTAGTGTAGAAAGTAATGGGATGACGAATCTTAACCCCTTCCCGTTAGCACCATACTTAGATCTCAGGATGGCGGCACTTTTAGACGCTGATACCGACTTGGTTTTAAAACAGAATGGAAATGGGCCGCTCATAGGCAGTGCCAATTTTAATTCTTACGTAAAACACAAAGACACACTCTCAAACAAGCACAAAGGAAAGAAAATGGCAATTCTGAATCATGTCTTAGAAAGTCCGTGGTGTCCACGTATACCCAAACCCTATTTAATTTGTAagaatgtaaaaagaaatccaGATTTATGTGAAAATACGGATAAGttgaTGGAAGAGAAGCCAGACAATGATACAAACAACAACGTATCGTTAGTATCCAATGCCGAAGTAAAAGACAATCAAAGCGTGAAACAGGAATCTACAAGCTCTAATTTTGAAGATTACAGTTGTAACGTTTGTGATCAgGTGTTCCCAAATGCAGACGCGCTATCAAACCACATGAGGCGCCACACGACTCCAAGCCGTTACTCCTGCACTGAATGCTCAAAGACCTTCTCTCAACTCCGAAACTTCAAATACCACATGTCAGTCCATAGAGGCACCAGGGAGTTCGCTGCCACTTGTCCTGTATGTGGAAAATACTTCAACGATCGCGGGTATCTCAGCAGTCATATGAAGATACATAGAAACCGGAAAGAGTACAAATGCTCACTGTGTCCAAAATCATTCAACCAGCGAGTAGCTTACAACATGCACGTGAGAATTCACACAGGCGTGAAGCCTCACGTATGCGCGGAGTGCGGCAAGGCGTTCTCGCGGAAGATGCTGCTGAAACAGCACCAGCGCACCCATTCCGGGGAGAGGCCGTATGGGTGCGCGCACTGCGGGAAGCGATTCGCGGACCGATCCAACATGACGCTGCATCTGCGACTGCATTCAGGCGTGAAACCGTTCTCCTGCTCGCTGTGTCCGAAGTCTTTCACCAAGAAGCATCACCTCAAGTCCCATCTGAACTTCCACACGGGTGTGAAGCCGTACTCCTGTCCGCGATGCCGACTGGCTTTCACCCAATCCTCGAACATGAGAACTCACCTCAAGAAGTGTAGTGCTCCAACGCCGCCGTCTCAACTCGCTGATAATAGCTCTATTGAGCCTGTACTAGATAAAACAGATCCAGATTCAGCTTGTACAACAGATCCTTAA
Protein Sequence: MCEWLACREWCDVQLLCGGRAFSAHRAVLASASAFLRQILLSCPTEEASTFIVLPEFDIEAMSSVLYYIYNGEVVIQKQKLGMFLDIVKAMQIFVDSQYLARSDIEHADFNKCQDRVCIQSGASAFCLESETRNGKNYVNIKKGEALQDILRRCSFSEGILDWLKPREGLDSDDKSAFEVLSQFGDRQRSGLLRDLFIATYPEYGNANGRSAGVLEIINERYRGPTSVLSTNANGSHPGAGCARGALTTSHSLNGPPYMKNECHAMEYGNLNMEKTMKQRSTKSILERCRSVESNGMTNLNPFPLAPYLDLRMAALLDADTDLVLKQNGNGPLIGSANFNSYVKHKDTLSNKHKGKKMAILNHVLESPWCPRIPKPYLICKNVKRNPDLCENTDKLMEEKPDNDTNNNVSLVSNAEVKDNQSVKQESTSSNFEDYSCNVCDQVFPNADALSNHMRRHTTPSRYSCTECSKTFSQLRNFKYHMSVHRGTREFAATCPVCGKYFNDRGYLSSHMKIHRNRKEYKCSLCPKSFNQRVAYNMHVRIHTGVKPHVCAECGKAFSRKMLLKQHQRTHSGERPYGCAHCGKRFADRSNMTLHLRLHSGVKPFSCSLCPKSFTKKHHLKSHLNFHTGVKPYSCPRCRLAFTQSSNMRTHLKKCSAPTPPSQLADNSSIEPVLDKTDPDSACTTDP*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00209035; iTF_00208062; iTF_00208137;
90% Identity: iTF_00209035; iTF_00208062; iTF_00208137;
80% Identity: iTF_00209035;