Blac033276.1
Basic Information
- Insect
- Blastobasis lacticolella
- Gene Symbol
- zfh1
- Assembly
- GCA_905147135.1
- Location
- LR990066.1:11857353-11860207[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0016 0.15 13.6 0.7 2 21 119 138 118 139 0.94 2 19 0.42 38 6.0 0.7 2 23 144 164 144 166 0.87 3 19 0.031 2.9 9.6 1.9 1 23 169 192 169 192 0.96 4 19 0.00029 0.027 16.0 0.2 3 23 199 219 198 219 0.97 5 19 0.26 24 6.7 2.6 2 22 223 243 223 243 0.91 6 19 0.0036 0.33 12.5 1.8 1 23 254 277 254 277 0.96 7 19 0.00093 0.085 14.4 0.3 3 23 285 305 284 305 0.98 8 19 0.043 3.9 9.2 0.2 1 23 311 333 311 333 0.97 9 19 0.0021 0.19 13.3 0.8 1 23 353 376 353 376 0.95 10 19 4e-05 0.0037 18.7 0.1 2 21 478 497 477 498 0.95 11 19 2.8 2.6e+02 3.4 0.1 3 23 504 524 503 524 0.82 12 19 7 6.4e+02 2.2 0.1 2 23 530 552 529 552 0.89 13 19 0.00018 0.016 16.6 0.1 2 23 558 579 557 579 0.96 14 19 0.31 29 6.4 6.1 1 21 582 602 582 603 0.95 15 19 0.0039 0.36 12.4 0.4 1 23 617 640 617 640 0.93 16 19 0.00012 0.01 17.2 0.5 1 23 646 668 646 668 0.98 17 19 0.071 6.5 8.5 0.2 5 23 677 695 676 695 0.96 18 19 0.039 3.5 9.3 0.6 1 23 701 724 701 724 0.93 19 19 0.00014 0.013 16.9 0.8 1 23 732 755 732 755 0.93
Sequence Information
- Coding Sequence
- ATGGAGACCTCGGCAATCCTGCCGGAAAAGATATGCAGACAGTGCGCGAACAGGGTGACCGCTTTCATGCCCTTCATTGCCCTCTGCAAGAAGTCCGCTAAGATCTGGAACAACGTCGCCGATTACGTCGTCCAAAACGGCTTAACCAGAATTAACAAGAGAGCGCAGAGTCTCTTCGTCGTTGTCGAGGCGACAGATGGGTCAGACGTCACGAGGGTCACCGACAAAGTCAAATATTCGAGACCAAAGAAGAATAGAAAGATTGTCCTGAAGAACTTTCAACTGAGACTGACCAGGGCTAAAGCGATAGAAAGACGCAACGAAAGGGAGAAGCTGGTCACCGGCTCGAATCTCAAATGTCCGGAATGCTCTACGTTCTTCTCGAGTTTGTTCAAGCTGAGACAGCATCTGAAAGACACAGCGTTGAGAGTGTGCAATATTTGCCACAAAGTGGTGCCAAAGAAGTCTGTGAAAGACCATTTAGAAAAGCACCAAGTGACGGTGTACGCTTGTAATGTTTGCGATGACTGCTTCGATGATCCAGTCTCTTACGTGAAGCATGCGAAGAGGTGCCACTCGAAAGGTGGGGCTTTCTGCTCCATATGCACCAGGAGCTTCAGCAACGATACAGCCTTGGCTGCTCACCTGCGGGCTCATAAGGCAGAGGTCTGCAACGGGTGCCGGCAAGTCTTCAAGCACAAGTTATGCTTCATAGCCCATTCCAAGACCTGCCCGAACGCAAAACCAATGCCTTCAAACTATATATGTGATTATTGCACCCGATGTTACGAATTCAAACAGGCCCTGGTCATCCATATACAGAATAGACACGCGGGTGGAGGCCAGCTCTTGTGTTCGTACTGTGACAAACGGTTTGGATCCCAGCAAGGTCTCTTGGAGCACGAGAAGATTCACCAAGAACGGGACAAGTACGTCTGTGACCGCTGCGGTGGGGAGTTTATGACGAGGAGAGGTTATAGAGGTCACATAAAGGGACACGTTTTGGATGGGACCATGACTTTGGAAGAATCCGACCAATACATGAAGCTGAGGGTTTACAATTGTCGTGTGTGCTCGCGCGGCTTCAGACGGATTAATAGCCTTAAAATTCATCTTCAAGCGAAACACAACCTCAAGGTGGACGACCTTATGGAAATATGGGAGGAGGAGTATCTGCCACGGGGACTTTGCTGCCTGTGCCTGGAGGGAGCACTCGCGGCAGCCAGCTTCCGCAAACTGGTGGCCAGATCCGCCGCAGAATGGCCCCGGGCGCTGGAGGGGCTCAGCGATGTCCACACCACCTCCCAGGATGGCGCGTTGTACGTCCTATATAACTCGAAAGGAGTCTTCCCAATGGATAAGCCTGTAGAAGAGGAGTCACCCGAGAAGACAGTTAGAGCAAGGAGGAAAAGGAAAAGCGAGCCGCAGACGAAATGTCCGGATTGCGGAAAGAGATTCATCTCGATCGACCAGCTCAATCTCCATCTGAAGAATTCGATAAAAAGGGCCTGTAAAGACTGCGGGATGGTCACGGAGAAGACTGCGATGTCGAGACATGTGTTGGAAGTGCACAATAAAGGGGTCCTGACTTGCGACATATGCGTCCTGGATTTCGACGATATAGCCACAGTGGAGGCTCACTTCGCGAGGTGTCACGACAACAAGAACGACGTCTGCATGATTTGCGGGCACGGATTCGCGAACGCTAGAGCTCTGCGCGCCCATATGTACTCTCATAGCTTGTTTCACTGCACGACTTGTAACTCTAGCTTCGAGAACAGGAAGTGTCTCAAGTACCACCAGAAACTGTGCTCAGTGTCCAAAGCCCCGCTTGAAAAGTTCACTTACTACATGTGCGATCATTGCGGAGGAGTGTACGATAAGAAACCGTCTCTCAGAGTCCATATAGTGCAGAAACACTTGAACGTTCTGCCGTACGTATGCGCGACTTGTGGCAAGCGAGCGTCCACGCTGGCCCATCTTCGTTCCCATCAGCTGATTCACGCGGAACGTGTGCAGTTCCGATGCGGATGTGGCGCCAAATTCCGTACGGAGATCGGTTACCAGCTCCACCAGAGGATTCATACGGGGGAGAAGCCGTACGAATGCAAAGAGTGTGGATTAAGCTTCCTTTCTGCGTCTAGACGTTTGGATCATATCAAGCGAAAGCACAGGAGTGCGAAAGATATGCCGCATGCGTGCGACAAGTGTCCGCAAAGGTTCATAAGGCCTTTCGAGCTGAAGAAGCATTACATGGCGGCCCATTTCTCGACGATTGAAGTGAAGCCGTTGGCCAAGCGACCCAGGAGGATCATGTGA
- Protein Sequence
- METSAILPEKICRQCANRVTAFMPFIALCKKSAKIWNNVADYVVQNGLTRINKRAQSLFVVVEATDGSDVTRVTDKVKYSRPKKNRKIVLKNFQLRLTRAKAIERRNEREKLVTGSNLKCPECSTFFSSLFKLRQHLKDTALRVCNICHKVVPKKSVKDHLEKHQVTVYACNVCDDCFDDPVSYVKHAKRCHSKGGAFCSICTRSFSNDTALAAHLRAHKAEVCNGCRQVFKHKLCFIAHSKTCPNAKPMPSNYICDYCTRCYEFKQALVIHIQNRHAGGGQLLCSYCDKRFGSQQGLLEHEKIHQERDKYVCDRCGGEFMTRRGYRGHIKGHVLDGTMTLEESDQYMKLRVYNCRVCSRGFRRINSLKIHLQAKHNLKVDDLMEIWEEEYLPRGLCCLCLEGALAAASFRKLVARSAAEWPRALEGLSDVHTTSQDGALYVLYNSKGVFPMDKPVEEESPEKTVRARRKRKSEPQTKCPDCGKRFISIDQLNLHLKNSIKRACKDCGMVTEKTAMSRHVLEVHNKGVLTCDICVLDFDDIATVEAHFARCHDNKNDVCMICGHGFANARALRAHMYSHSLFHCTTCNSSFENRKCLKYHQKLCSVSKAPLEKFTYYMCDHCGGVYDKKPSLRVHIVQKHLNVLPYVCATCGKRASTLAHLRSHQLIHAERVQFRCGCGAKFRTEIGYQLHQRIHTGEKPYECKECGLSFLSASRRLDHIKRKHRSAKDMPHACDKCPQRFIRPFELKKHYMAAHFSTIEVKPLAKRPRRIM*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00208138;
- 90% Identity
- iTF_00208138;
- 80% Identity
- -