Badu017938.1
Basic Information
- Insect
- Blastobasis adustella
- Gene Symbol
- zfh1
- Assembly
- GCA_907269095.1
- Location
- OU026141.1:11058294-11061150[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0013 0.12 13.7 0.7 2 21 119 138 118 139 0.94 2 18 0.1 9.8 7.7 1.5 2 23 144 164 144 165 0.92 3 18 0.026 2.4 9.6 1.9 1 23 169 192 169 192 0.96 4 18 8.4e-05 0.008 17.5 0.6 3 23 199 219 198 219 0.98 5 18 0.21 20 6.7 2.6 2 22 223 243 223 243 0.91 6 18 0.0079 0.75 11.2 2.1 1 23 254 277 254 277 0.96 7 18 0.00076 0.072 14.4 0.3 3 23 285 305 284 305 0.98 8 18 0.063 5.9 8.4 0.2 1 23 311 333 311 333 0.97 9 18 3.5e-05 0.0033 18.7 0.1 2 21 449 468 448 469 0.95 10 18 0.38 36 6.0 0.1 3 23 475 495 474 495 0.92 11 18 5.7 5.4e+02 2.2 0.1 2 23 501 523 500 523 0.89 12 18 0.00014 0.014 16.7 0.1 2 23 529 550 528 550 0.96 13 18 0.26 24 6.5 6.1 1 21 553 573 553 574 0.95 14 18 0.0032 0.3 12.5 0.4 1 23 588 611 588 611 0.93 15 18 9.4e-05 0.0089 17.3 0.5 1 23 617 639 617 639 0.98 16 18 0.058 5.5 8.5 0.2 5 23 648 666 647 666 0.96 17 18 0.032 3 9.3 0.6 1 23 672 695 672 695 0.93 18 18 0.00012 0.011 17.0 0.8 1 23 703 726 703 726 0.93
Sequence Information
- Coding Sequence
- ATGGAGACCTCGGCAATCCTGCCCGAAAAGATATGCAGACAGTGCGCAAACAGGGTGACCGCTTTCATGCCCTTCATTGCCCTCTGCAAGAAGTCCGCTAAGATCTGGAACAACGTTGCTGATTACGTCGTCCAAAACGGCTTAACCAGGATTAACAAGAGAGCGCAGAGTCTCTTCGTCGTTGTCGAGGCGACAGATGGGTCGGACGTCACGAGGGTGACCGACAAAGTCAAATATTCGAGACCAAAGAAGAATAGGAAGATTGTCCTGAAAAACTTTCAAGTGAGATTAAGCAGGGCGAAAGCGATAGAAAGACGCAACGAAAGGGAGAAACTGGTCACCGGCTCGAATCTCAAATGTCCGGAATGCTCTACGTTCTTCTCGAGTTTGTTCAAATTGCGACAGCATCTGAAAGACACAGCGTTTAGAGTGTGCAATATTTGTCACAAAGTGGTGTCAAAGAAGTCTGTGAAAGATCATTTAGAAAAGCACCAAGTGACAGTGTATGCTTGTAATGTTTGCGATGACTGCTTCGATGACCCTGTCTCTTATGTTAAGCATGCGAAGAGGTGCCACTCGAAAGGTGGGGCTTTCTGCTCGATGTGTACCAGGAGCTTCAGCAACGATACAGCATTGGCTGCTCACTTGCGGACTCATAAGGCCGAGGTCTGCAACGGGTGCCGGCAAGTCTTCAAGCACAAATTATGCTTCATAGCCCATTCGAAGACCTGCCCGAACGCAAAACCAATGCCTTCAAACTATATATGCGATTATTGCTTCCGATGTTACGAATTCAAACAGGCATTGGTCATCCATATACAGAATAGACACGCAGGTGGTGGTCAGCTCTTGTGTTCGTACTGTGACAAGCGGTTCGGGTCCCAGCAAGGTCTCTTGGAGCACGAGAAGATTCACCAAGAAAGGGACAAGTACATCTGTGACCGCTGTGGTGGGGAGTTTATGACGAGGAGAGGTTATAGAGGTCACATAAAGGGACACGTTATGGACGGGACCATGACCTTGGAAGAAGCTGACCAATATATGAAGCTTAGAGTTTACAATTGTCGTATATGGGAGGAGGAGTATCTGCCACGGGGACTTTGCTGCCTGTGCCTGGAGGGAGCACTCGCGGCAGCCAGCTTCCGCAAACTGGTGGCCAGATCCGCCGCAGAATGGCCCCGGGCGCTGGAGGGGCTCAGCGATGTCCACACCACCACCGAGGATGGCCCGTTGTACGTCCTGTATAACTCGAAAGGAGTGTTCCCAATGGAGAAGCCTGTAGAAGAAGAGTCACCTGAGAAGACAGTCAGAGCGAGGAGGAAAAGGAAAAGCGAGCCGCAGTCGAAATGTCCGGATTGCGGAAAGAGATTCATCTCGATAGACCAGCTCAATCTCCATCTGAAGAATTCGATAAAAAGGGCCTGCAAAGACTGCGGGATGGTTACGGAAAAGACTGCGATGTCGAGACATATGTTGGAAGAGCACAATAAAGGGGTCCTGACTTGCGACATATGCGTCCTGGATTTCGACGATATAGCCACAGTCGAAGCTCACTTCGCGAGGTGTCACGACAACAAGAACGACGTCTGCATGATTTGCGGGCACGGGTTCGCGAACGCTAGAGCTCTACGCGCCCACATGTACTCCCACAGCTTGTTCCACTGCACGACTTGCAATTCCAGCTTCGAGAACAGGAAGTGTCTAAAATACCACCAAAAACTGTGCTCTGTGTCCAAGGCCCCGCTTGAGAAGTTCACTTACTACATGTGCGATCACTGCGGAGGGGTGTACGATAAGAAACCGTCTCTTAGAGTCCATATAGTGCAGAAACACTTGAACGTATTGCCGTACGTGTGTGCGACTTGTGGCAAGCGAGCGTCTACGCTGGCCCATCTTCGTTCGCATCAGCTGATTCACGCGGAACGTGTCCAGTTCCGATGCGGATGTGGCGCAAAGTTCCGTACGGAGATAGGGTACCAGCTCCACCAGAGGATTCATACGGGGGAGAAGCCGTACGAATGCAAAGAGTGTGGGTTGAGCTTCCTTTCGGCATCCAGGCGTCTGGATCATATCAAACGAAAGCACAGGAGTGCGAAAGACATGCCGCACGCGTGCGACAAGTGTCCGCAAAGGTTCATAAGGCCTTTCGAGCTCAAGAAGCACTACATGGCGGCGCATTTCTCCACGATTGAAGTGAAGCCGTTGGCCAAGCGACCCAGGAGGATCATGTGA
- Protein Sequence
- METSAILPEKICRQCANRVTAFMPFIALCKKSAKIWNNVADYVVQNGLTRINKRAQSLFVVVEATDGSDVTRVTDKVKYSRPKKNRKIVLKNFQVRLSRAKAIERRNEREKLVTGSNLKCPECSTFFSSLFKLRQHLKDTAFRVCNICHKVVSKKSVKDHLEKHQVTVYACNVCDDCFDDPVSYVKHAKRCHSKGGAFCSMCTRSFSNDTALAAHLRTHKAEVCNGCRQVFKHKLCFIAHSKTCPNAKPMPSNYICDYCFRCYEFKQALVIHIQNRHAGGGQLLCSYCDKRFGSQQGLLEHEKIHQERDKYICDRCGGEFMTRRGYRGHIKGHVMDGTMTLEEADQYMKLRVYNCRIWEEEYLPRGLCCLCLEGALAAASFRKLVARSAAEWPRALEGLSDVHTTTEDGPLYVLYNSKGVFPMEKPVEEESPEKTVRARRKRKSEPQSKCPDCGKRFISIDQLNLHLKNSIKRACKDCGMVTEKTAMSRHMLEEHNKGVLTCDICVLDFDDIATVEAHFARCHDNKNDVCMICGHGFANARALRAHMYSHSLFHCTTCNSSFENRKCLKYHQKLCSVSKAPLEKFTYYMCDHCGGVYDKKPSLRVHIVQKHLNVLPYVCATCGKRASTLAHLRSHQLIHAERVQFRCGCGAKFRTEIGYQLHQRIHTGEKPYECKECGLSFLSASRRLDHIKRKHRSAKDMPHACDKCPQRFIRPFELKKHYMAAHFSTIEVKPLAKRPRRIM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00209115;
- 90% Identity
- iTF_00209115;
- 80% Identity
- -