Blac032543.1
Basic Information
- Insect
- Blastobasis lacticolella
- Gene Symbol
- -
- Assembly
- GCA_905147135.1
- Location
- LR990066.1:5498867-5501706[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0045 0.41 12.2 3.8 1 23 41 64 41 64 0.96 2 19 0.18 17 7.2 0.0 3 23 91 112 90 112 0.93 3 19 0.019 1.8 10.2 1.8 2 23 135 156 134 156 0.97 4 19 0.00039 0.036 15.6 1.3 1 23 160 182 160 182 0.98 5 19 0.0014 0.13 13.8 0.2 2 19 188 205 187 206 0.96 6 19 0.0034 0.31 12.6 1.6 1 23 216 239 216 239 0.96 7 19 0.0039 0.36 12.4 0.9 1 23 245 268 245 268 0.94 8 19 0.0017 0.15 13.6 2.9 1 23 274 296 274 296 0.95 9 19 2.5e-06 0.00022 22.5 1.1 1 23 302 324 302 324 0.99 10 19 4.5 4.1e+02 2.8 0.3 1 23 392 415 392 415 0.87 11 19 0.33 30 6.4 0.1 2 23 441 462 441 462 0.97 12 19 0.022 2 10.1 3.1 2 23 485 506 485 506 0.97 13 19 6.8e-05 0.0062 18.0 1.5 1 23 510 532 510 532 0.98 14 19 0.032 2.9 9.6 1.2 1 23 537 560 537 560 0.95 15 19 0.016 1.5 10.5 0.2 1 23 566 589 566 589 0.87 16 19 0.043 3.9 9.1 0.9 1 23 596 619 596 619 0.97 17 19 0.0099 0.9 11.1 2.9 1 23 625 647 625 647 0.97 18 19 4.3e-06 0.00039 21.7 3.7 1 23 653 675 653 675 0.98 19 19 8.7e-07 7.9e-05 23.9 0.4 1 23 681 703 681 704 0.96
Sequence Information
- Coding Sequence
- ATGCTCGAGACAAGGGGCAGGCGGCGCACGGGGAATACAAAGAGATCTATTTTCAGGAACAACCTAAGGACCATTCTCGATAGCAGTACAGCATATCCCTTTAAACACAAGAACGGCGTGTTCCATTGCTTCTTTTGCAACACGAAGTTCAGTGATCCCGAGAAACTGAGAGAACACAACCGCTCCTTGCACGGCGACACGAGAAAGTTCGCCGTCTCCTTCACGCCTAATAAGTACGAGCCCATTAAGATAGATTTCGGGGAAGCCGCGTGCAGGATTTGCGGTGTGCCTGTAACCAACTACGGGGTTCTGAAAGCACATATACTCGCTGAGCACGGGAAGGAGATCGACACGTCCTACGGCGAGACGATACTGCCGTACAGTCTCGACAGGAACGAGAATAAATGCCAGGTTTGCGGGAAATCGTACGAGCTGTTCCTCACATTGCATAGACACCTCAACGAACACTACAACGATTATATTTGCGAGAATTGTGGTAAGAGATTCGCCACAAGAGGCAGAATGTTCAGTCACAGCAAAACACATTCCCGACAAGACTGGCCTTGTAGGAAGTGTGACAAGAAGTTCGCGACATATTCAGCGTTGCGTTGGCATGATGGCAAGGAGCACGAATGCAGGGTTATGTACAGTTGTCCGATTTGCGAGGAACGATTTACCTCATACCTGCACAGGATGAAGCATCTGAGCTCAGTGCATGGACAGGAGACCATCTATGCTTGCCCGTCTTGTCCAAAAGTCTTTAAGCTCTGCAGTCTCAGGACAGCGCATATAAAGTTCGCGCACAAACAGGAAAGGAATCACGAGTGTACGACCTGCGGGATGAAGTTCTTCACCAACCGTGAATTGAAGAATCACGAAGTGAAGCACAGTGGGGCGAGGATATATCAATGTGATGTGTGCAAGAAGTCTTATGCGCGGATGAAAACTTTGCGAGAGCATATGAGGATACACAACAATGATAGGAGGTTCGCGTGCCAAGTCTGTGgaGCAAAGACTgaagataaacaaaaaaaggcCAAGACTGAACAAAAGAGTGAGGCCAAGACCCGCGAAGAACAGTTGGGCATCGCGAGGCGAGCTGCGTTCATTACCAACATATCGATAATACTGGAGTGCTGCACAGCGTACCCCTTCAAGTATCGGAAGGGGGCGTATCTTTGCTATTTTTGTATGAACACGTATACGGAGCCCGATGACCTACGCGAACACTACGCAGAGACGCACACAGACGTGAAACATGTCTTCCTCTCCCGTAAACCTAGGAGTTACGATCCGCTGAAGGTGGATTTTTCAAAAGCAGTTTGCAAGCTTTGCGAGTTTATCGTACCGGATTATGAAACGATGAAAACGCATCTTAAGGTACATGGGAAAGCTTTAGACTTGACTCATGGAGAGAGCGTGCTTCCGTACAGTCTGAATAAAGACGAAAATCGATGTCTGATCTGCAGAAAAGAGTACGAGACGTTCTTCAGTCTCCACAAGCACATGAACGAGCATTTCGAACGTTATATATGTGAGACGTGCGGGAAGAAATTCGCTACGTACTCGAGGATGATGAACCATACTAGGAGCCACGAACGTGGAAAGTTTCCATGCAAAAGATGCGGCGAGACCTTCCTAACCTACTCCTCGATGCACAACCATGTGGCCAAAGCGCACCGATCGAACAATAGATACAAGTGTCCGATTTGCGACGAGAAGTTCCCTGAATACAAACTGAGGTTGGAACATCTAAGCAACGTTCATGGGAAGAAGCCGGCCGTGTTCCCCTGTCCATCGTGTCCTAGGATTTTCGACCTGTGCAGTCGAAGGACGGCGCATATAAGGTCTCAGCACTTGATGGAGAGGAACCACGAGTGTACCGAATGCGCGATGAAGTTCTTCACAAATAACGAGCTGCGGAATCATAAGATAAAGCACGGCGGGCCGAGGATCCACCAGTGTCAAGTCTGCAAGAAGTCGTATGCGAGAAAGAAGACTCTACGCGAACATATGAGGATTCACAATAACGACAGGCGGTTTGTCTGTCCCGTATGTGGTCAAGCGTTCATACAGAACTCCAGTATGAATCAGCATCTAAGAGTTCACCACTCGGCGCAAGCCGTTCGGATCAAAACCGATGTTTCGGTTGATTTCAAATAG
- Protein Sequence
- MLETRGRRRTGNTKRSIFRNNLRTILDSSTAYPFKHKNGVFHCFFCNTKFSDPEKLREHNRSLHGDTRKFAVSFTPNKYEPIKIDFGEAACRICGVPVTNYGVLKAHILAEHGKEIDTSYGETILPYSLDRNENKCQVCGKSYELFLTLHRHLNEHYNDYICENCGKRFATRGRMFSHSKTHSRQDWPCRKCDKKFATYSALRWHDGKEHECRVMYSCPICEERFTSYLHRMKHLSSVHGQETIYACPSCPKVFKLCSLRTAHIKFAHKQERNHECTTCGMKFFTNRELKNHEVKHSGARIYQCDVCKKSYARMKTLREHMRIHNNDRRFACQVCGAKTEDKQKKAKTEQKSEAKTREEQLGIARRAAFITNISIILECCTAYPFKYRKGAYLCYFCMNTYTEPDDLREHYAETHTDVKHVFLSRKPRSYDPLKVDFSKAVCKLCEFIVPDYETMKTHLKVHGKALDLTHGESVLPYSLNKDENRCLICRKEYETFFSLHKHMNEHFERYICETCGKKFATYSRMMNHTRSHERGKFPCKRCGETFLTYSSMHNHVAKAHRSNNRYKCPICDEKFPEYKLRLEHLSNVHGKKPAVFPCPSCPRIFDLCSRRTAHIRSQHLMERNHECTECAMKFFTNNELRNHKIKHGGPRIHQCQVCKKSYARKKTLREHMRIHNNDRRFVCPVCGQAFIQNSSMNQHLRVHHSAQAVRIKTDVSVDFK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00208142;
- 90% Identity
- iTF_00208142;
- 80% Identity
- -