Blac019735.1
Basic Information
- Insect
- Blastobasis lacticolella
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905147135.1
- Location
- LR990052.1:17415919-17426669[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.4e-75 2.4e-70 238.3 23.6 1 298 138 428 138 430 0.89 2 2 1 3.8e+04 -5.7 14.7 1 151 426 473 426 500 0.55
Sequence Information
- Coding Sequence
- ATGCATTCTGCGAGTGTTTCCCGAAACGAGTACTTGAAGACCGGAGTTGTCAGACAGAATAATTCTAGGCACTACCGCCACGCCACGTCAGATGCCTGGCTTAAGTCAGAAAGGCAGCCGAGCGGTGCGGTGTGGATTAAACACATCACACAAATAGTCATTCTCACGCGCGAACTTGCTGAAACGATGAACCTGAAGTATAAAGTCGAAAAGAGTCATCCTCCTGACTCACTTCCGAGAAAAGAACCCTCACCTATGAACCTGAAGTATAATGTAGAAAAGAACCCTCCTCCTGACTCAGTTCGGAGAAAAGAACCCTCAACGATGATCATGAAGTATCAAGTAGAAAAGAACTCTCCTCTTAACTCACTTCTGAGAAAAAAACCCTCAACGATGAACCTGAAGTATAACGCAGAGCAGCGtctggcggcgcggcgcgcggctcgAGCGGAGGCGCGCGAGATCCGCATGCGGGAGCTGGAGCGACAGCAGCGCGAGCAGGAGAACAATGCCGACAAGGCGTACGACATGTACACAGAGACGGTGTCGCGGCGCGGCGGGTCGCGGCTGGCGGCGCTGGGGCCGGCGACGGCGGCCGTGCTGTCGCCGCGGCGCAGCTCGGAGGACTCCGCCGACGACGGCTACGCGGCCAAGGATCTCAGGCACGAAATGAAGGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCACAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTGGAGTTGCTTGGTGACCGCCTGGAAGAGCTCAGGGAGGACCATGCGCAGTTGCAGCGCGAGCACAAAGAGAAATGCTCGTCCCACGAGCGTCTGAAACGGGAACACGCCTCCACTGAGCGGGAACTGGCCTGCGCAAGGGACGCCATCAGAGCCCGAGACGCGGCCGCTGCGGCCGCGGGCCGGGCCTTCGTTGATGCCTCGTGTGCCAAGGAAGATGGCATGGAAGATGTGGCCCCAGGAGAAGGATTTGGATCGGTCCCTCCCCTGGCGTTGGTGTCGCACGAATCGGAGAAGACGCTGAATGATGCCGGCGAAGGGACCCTAGACGTACGGTTGCAGAAGCTGGTGGCCTCGAAGACGGCGCTGGAGTCGGAAGTGAGGAAGCTGAAGTTGCAGCTCAACGACGAGCGCGCGGCGAGGCAGAACGGACTCGCGGGACATGATAATGATCATGATAGTGAAGTGGAAGCCCTCCGCAAATCGGTATCAGACGCCAAAGCCCGGGCCGCCCGCGCGGAGGCCGAAGCAGCCCTAcacgccgcggccgccgcgagACTCGAAGCCCAAGTCGCAAGGTTGAAAGCCCGTCAGGACCATCAGGACGATAACGAGGAACAGCTGAAGCAGGAAAGGAGAAGGCTGCAGCGGGAGGCGCGGGAAGCTCTGAACCGGGTCGAGGAGTTGGAGACAGAGAACAGCCACCTCACGAAGCGACTAGACAAACTGAAAAACGCCAAATCCGCCCTCCTGAAAGACCTGTGA
- Protein Sequence
- MHSASVSRNEYLKTGVVRQNNSRHYRHATSDAWLKSERQPSGAVWIKHITQIVILTRELAETMNLKYKVEKSHPPDSLPRKEPSPMNLKYNVEKNPPPDSVRRKEPSTMIMKYQVEKNSPLNSLLRKKPSTMNLKYNAEQRLAARRAARAEAREIRMRELERQQREQENNADKAYDMYTETVSRRGGSRLAALGPATAAVLSPRRSSEDSADDGYAAKDLRHEMKEVEEKFRKAMILNAQLDNDKAALGYQLELLGDRLEELREDHAQLQREHKEKCSSHERLKREHASTERELACARDAIRARDAAAAAAGRAFVDASCAKEDGMEDVAPGEGFGSVPPLALVSHESEKTLNDAGEGTLDVRLQKLVASKTALESEVRKLKLQLNDERAARQNGLAGHDNDHDSEVEALRKSVSDAKARAARAEAEAALHAAAAARLEAQVARLKARQDHQDDNEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -