Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 0.066 42 5.0 0.0 27 39 23 35 21 38 0.89

2 3 7.6e-16 4.9e-13 49.6 0.1 2 45 53 97 52 97 0.96

3 3 3.9e-18 2.5e-15 56.9 0.0 1 42 104 146 104 148 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	0.066	42	5.0	0.0	27	39	23	35	21	38	0.89
2	3	7.6e-16	4.9e-13	49.6	0.1	2	45	53	97	52	97	0.96
3	3	3.9e-18	2.5e-15	56.9	0.0	1	42	104	146	104	148	0.95

Coding Sequence: ATGGCGAAGGAATGTTCCAAGAATTGTGAATGTTGGATCGGTGTATGTGTTGTTTCTGTGCTGCCAGGCATCCCAAGCAGCACTCTATACAAGATCGCCCGCCGGGAGGGCATCCGGCTGGCCGCGCCGTTCAACGCAGCTCCGGTGTCATGGCGTCGAGCTGACTTGGACGCGGCTCTTGCTGACATCCGCCGCGGCGCCGCGTCAGTTCAGCGCGCCGCCGTCGCTTATGGGATACCCACCGGCACTCTCTACGGGCGCTGCAAACGCGAAGGCATCGAGCTGTCGCGCGCCAATCCCACACCGTGGTCGGAGGACGCTATGGGGGAGGCGCTCGAAGCCGTCAGGGTGGGGCAGATGTCCATCAACCAAGCAGCCATCCACTACAACCTGCCGTACTCCTCGCTCTACGGCCGATTCAAGCGCTGCAAGTACCAGCCACAGGGCCTGCCTTCGCTCCAAGACCATCAAGACCCCCAAAAGCCTCATGAAATGGACCCCCATGGCCTGGACCTACAGCAGTATTACCACCATCCCGGCCCACACATCATCCATCACATGCCTGACGATTCACAGGACCAGGGCATCCGAGACCACAACGGTTCGCACGACCATATGAACTCACACCATACAGGACCTCAGAACCAAGCGGAGCTACTCCAGCCAGGATCACAGACCCATTTGGGGTCTCAGGACCACATAGGTTTACAGAATCAAGTGCCACAGGATCATAGAGTAAACGAGATACAACTGCGCGAAGACAATACCCACTATTTCCCCCACATGGCTCTAGACCCCATGCATATGGTACATGAATACAGTCCCGGTCAAAGTATGTATTACGCGAGTTGCAATATGGCTAGTTGA
Protein Sequence: MAKECSKNCECWIGVCVVSVLPGIPSSTLYKIARREGIRLAAPFNAAPVSWRRADLDAALADIRRGAASVQRAAVAYGIPTGTLYGRCKREGIELSRANPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQPQGLPSLQDHQDPQKPHEMDPHGLDLQQYYHHPGPHIIHHMPDDSQDQGIRDHNGSHDHMNSHHTGPQNQAELLQPGSQTHLGSQDHIGLQNQVPQDHRVNEIQLREDNTHYFPHMALDPMHMVHEYSPGQSMYYASCNMAS*

Sequence clustering based on sequence similarity using MMseqs2