Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 0.058 39 4.9 0.0 27 39 32 44 31 47 0.89

2 3 6.5e-16 4.4e-13 49.6 0.1 2 45 62 106 61 106 0.96

3 3 3.3e-18 2.2e-15 56.9 0.0 1 42 113 155 113 157 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	0.058	39	4.9	0.0	27	39	32	44	31	47	0.89
2	3	6.5e-16	4.4e-13	49.6	0.1	2	45	62	106	61	106	0.96
3	3	3.3e-18	2.2e-15	56.9	0.0	1	42	113	155	113	157	0.95

Coding Sequence: ATGCCTTCTCCACAGTTTAACGCCCCACATGGTAGTTCTATTTTTACAGTTTACTTACTTTATTCTGATGACTGTGCTGTTTCTGTACTGCCAGGCATCCCAAGCAGCACCCTATACAAGATAGCCCGCCGGGAGGGCATCCGGCTGGCCGCGCCGTTCAACGCAGCTCCGGTGTCATGGCGTCGAGCTGACTTGGACGCGGCTCTTGCTGACATCCGCCGCGGCGCCGCGTCAGTGCAGCGCGCCGCCGTTGCTTATGGGATACCCACCGGCACTCTCTACGGGCGCTGCAAACGCGAGGGCATCGAGCTGTCGCGCGCCAACCCCACGCCGTGGTCGGAGGACGCCATGGGGGAGGCGCTCGAGGCCGTCAGGGTGGGGCAGATGTCCATCAACCAAGCGGCCATCCACTACAATCTGCCGTACTCTTCGCTCTACGGCCGATTCAAGCGCTGCAAGTACCAGCCGCAGGACCACCAAGACCCCCAAAAGCCTCACGAAATGGAGCCCCATGGCTTGGACCTACAGCAGTATTACCACCATCCCGGCCCTCACATCATCCATCACATGCCCGACGATTCACAGGACCAGGGCATCCCAGACCACAACGGTTCGCACGACCATATGAACTCACACCATACAGGACCTCAGAACCAAGCGGATCTACTTCAGCCTGGATCACAGACCCATTTGGGGTCCCAAGACCACATAGGTTTACAGAATCAAGTACCACAGGATCATAGAGCACACGAGATACAACTGCGCGAAGACCATACCCATTATTTGCCCCATATGGCTCTAGATCCCATGCATATGGTGCATGAATACAGTCCCGGTCAAAGCATGTATTACGCGAGTTGCAATATGGCTAGTTGA
Protein Sequence: MPSPQFNAPHGSSIFTVYLLYSDDCAVSVLPGIPSSTLYKIARREGIRLAAPFNAAPVSWRRADLDAALADIRRGAASVQRAAVAYGIPTGTLYGRCKREGIELSRANPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQPQDHQDPQKPHEMEPHGLDLQQYYHHPGPHIIHHMPDDSQDQGIPDHNGSHDHMNSHHTGPQNQADLLQPGSQTHLGSQDHIGLQNQVPQDHRAHEIQLREDHTHYLPHMALDPMHMVHEYSPGQSMYYASCNMAS

Sequence clustering based on sequence similarity using MMseqs2