Badu014332.1
Basic Information
- Insect
- Blastobasis adustella
- Gene Symbol
- -
- Assembly
- GCA_907269095.1
- Location
- OU026136.1:12636506-12640695[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.044 1.5e+03 0.3 0.0 14 45 86 117 75 125 0.67 2 15 0.0013 44 5.2 0.0 20 46 149 175 145 181 0.88 3 15 0.0047 1.6e+02 3.4 0.3 21 43 178 200 174 206 0.87 4 15 7.5e-05 2.5 9.2 0.0 21 44 206 229 203 234 0.90 5 15 0.0013 44 5.2 0.0 21 43 234 256 230 261 0.90 6 15 9.7e-06 0.33 12.0 0.1 20 45 261 286 257 293 0.87 7 15 0.019 6.4e+02 1.5 0.1 21 44 290 313 285 317 0.87 8 15 0.0014 46 5.1 0.0 21 44 318 341 315 345 0.90 9 15 0.011 3.8e+02 2.2 0.1 21 44 346 369 342 378 0.88 10 15 0.2 6.6e+03 -1.8 0.1 21 43 374 396 370 401 0.84 11 15 0.00071 24 6.0 0.0 21 44 402 425 393 429 0.88 12 15 8.2e-05 2.7 9.0 0.0 21 44 430 453 425 457 0.89 13 15 0.005 1.7e+02 3.3 0.0 21 43 458 480 453 486 0.88 14 15 0.0065 2.2e+02 3.0 0.0 21 43 486 508 481 513 0.90 15 15 0.013 4.4e+02 2.0 0.0 21 43 514 536 509 545 0.88
Sequence Information
- Coding Sequence
- ATGTGGACAGTTCCGCGGGAACACGAGAATTTAGAGGGAGTATTCGCCTACATTCGTGTAGTCCCTTGCAAAGCGTACTCCACATGTCCGCCGAAACATCACTTTCAGGATGGACCTCTGCGCTCTTTCAACAGATCATCGTGGAGACACCAGCCTCACCCCAGACAGGTCCATATTACAACGGGACACAGCAAGGCGCGACGGTATCCCTACGAGCAGAGTAGCAAGGTATTCAAATCGTCGGGCAACTTAAAGAAACACCAAAGTGTGCATTCACTCGAGCTCCCCTTCGGCTGTGACATTTGTGGCAAGATGTTGATGACTAAATCTGGAATCAAATGCCATATTATAACAAAACACAGCGAGGCGCGGCCTTATCCCTGCGCGCAGTGCGGCAAGGCCTTCAAATTGCAGTCCCTTTTAAATCATTACCAACGTGTGCATACAAGCGATCGCCCTTTCGGCTGTGACATCTGCGGGAAGGCCTACAAATTGTCATACGACTTAAAGACACACCTACGTGTACATAGAGGCGAACGCCCCTTCTGCTGTAACATCTGCGACAAGGCCTTCCAGCACTCGAGTAGTTTAAAGACTCACCAACTTATGCATACAGGTGAACGCCCCTTCGGCTGTGACATCTGCGGCAAGGCCTTCCAGCAGTCGAGCAATTTAAAGTCTCACCAACGTGTGCATACAGCTGAACGCCCCTTCGACTGTGACATCTGCGGCAAGGCCTTCCAGCAGTCGGGCCACTTAAAGACTCATCGACTTGTGCATACAAGTGAACGTCCCTTCGGCTGTGACATCTGCGGCAAGGCCTTTCAGCAGTCGAGCAATTTAAAGTCTCACCAACGTGTGCATACAGCTGAACGTCCCTTCGGCTGTGACACCTGCGGCAAGGCCTTCCAGCAGTCGTGCATCTTAAAGACTCACCAACTTCTGCATACAGGTGAACGCCCCTTCGGCTGTGACATCTGCGGCAAGGCATTCTATAAATCGAGCGCCTTAAAGAGACACCAACGTGTGCATACAGGCGAACGCCCCTTTGGCTGTGACACCTGCGGCAAAACCTTCCAGCAGTCGTGCAGCTTAAAGACTCACCAACGTGTGCATACAGGTGAACGCCCCTTCGGCTGTGACACCTGCGGCAAAACCTTCCAGCAGTTGTGCAGCTTAAAGAATCACCAACGTGTGCATACAGGCGAACGCCCCTTTGGCTGTGACACCTGCGGCAAGGCCTTCCAGCAGTCGAGCAATTTAAAGTCTCACCAACGTGTGCATACAGGTGAACGCCCCTTCGACTGTGACATCTGCGGCAAGGCCTTCCAGCAGTCGAGCAATTTAAAGTCTCACCAACGTGTGCATACAGGTGAACGCCCCTTCGACTGTGACATCTGCGGCAAGGCCTTCCCGCAGTCGGGCCACTTAAAGACTCACCAACTGGTGCATACAGGTGAACGCCCCTTCGACTGTGACATCTGCGGCAAGGCCTTCCCGCAGTCGGGCCACTTAAAAACTCACCAAGTGGTGCATACAGGTGAACGTCCCTTCGGCTGTGACACCTGCGGCAAGGCCTTCCAGCAGTCGTGCAGCTTAAAGACTCACCAACTGGTGCATACAGGTGAACGCCCCGTCAAGCATCTTAAAGAAACAAACACCTACGTCTACATACAAGCGAAGGCCTCTTCGACGGTAACATCTGCGGCAAAGCCTTCCAGCAATCGAGCCGCTTAA
- Protein Sequence
- MWTVPREHENLEGVFAYIRVVPCKAYSTCPPKHHFQDGPLRSFNRSSWRHQPHPRQVHITTGHSKARRYPYEQSSKVFKSSGNLKKHQSVHSLELPFGCDICGKMLMTKSGIKCHIITKHSEARPYPCAQCGKAFKLQSLLNHYQRVHTSDRPFGCDICGKAYKLSYDLKTHLRVHRGERPFCCNICDKAFQHSSSLKTHQLMHTGERPFGCDICGKAFQQSSNLKSHQRVHTAERPFDCDICGKAFQQSGHLKTHRLVHTSERPFGCDICGKAFQQSSNLKSHQRVHTAERPFGCDTCGKAFQQSCILKTHQLLHTGERPFGCDICGKAFYKSSALKRHQRVHTGERPFGCDTCGKTFQQSCSLKTHQRVHTGERPFGCDTCGKTFQQLCSLKNHQRVHTGERPFGCDTCGKAFQQSSNLKSHQRVHTGERPFDCDICGKAFQQSSNLKSHQRVHTGERPFDCDICGKAFPQSGHLKTHQLVHTGERPFDCDICGKAFPQSGHLKTHQVVHTGERPFGCDTCGKAFQQSCSLKTHQLVHTGERPVKHLKETNTYVYIQAKASSTVTSAAKPSSNRAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00208107;
- 90% Identity
- iTF_00208107;
- 80% Identity
- iTF_00208107;