Badu022080.1
Basic Information
- Insect
- Blastobasis adustella
- Gene Symbol
- lrrfip2
- Assembly
- GCA_907269095.1
- Location
- OU026127.1:2108535-2120833[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-75 1.2e-70 239.0 23.5 1 298 9 299 9 301 0.89 2 2 1 3.4e+04 -6.3 15.8 1 151 297 344 297 370 0.55
Sequence Information
- Coding Sequence
- ATGCGAAAGGAGACCCTCCGACAAGCAGAGCAGCGTCTGGCGGCGCGGCGCGCGGCGCGGGCGGAGGCGCGCGAGATCCGCATGCGGGAGCTGGAGCGACAGCAGCGCGAGCAGGAGAACAATGCCGACAAGGCGTACGACATGTACACAGAGACGGTGTCGCGGCGCGGCGGGTCGCGGCTGGCGGCGCTGGGGCCGGCGACGGCGGGCGTGCTGTCCCCGCGGCGCAGCTCGGAGGACTCCGCCGATGATGGCTACGCGGCCAAGGATCTCAGGCACGAAATGAAGGAGATGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCGCTCGGCTACCAGCTGGAGCTGCTCGGCGACCGCCTGGAAGAGCTCAGGGAGGACCACGCGCAGTTGCAGCGCGAGCACAAAGAGAAATGCTCGTCCCACGAGCGTCTGAAACGCGAACACGCTTCCACCGAGCGGGAACTAGCCTGCGCGAGGGACGCCATCAGAGCCCGAGACGCGGCCGCCGCTGCAGCGGGCCGGGCCTTCGTTGATGCCTCGTGTGCCAAGGAAGATGGCATGGAAGACGTGGCGCCAGGAGAAGGATTCGGGTCCGTCCCACCCTTGGCGCTGGTGTCGCACGAATCGGAGAAGACGCTGAATGATGCCGGCGAAGGGACTTTAGACGTGCGGTTGCAGAAGCTGGTGGCCTCGAAGACGGCGCTGGAGTCGGAAGTGAGGAAGCTGAAGTTGCAGTTGAATGACGAGCGCGCGGCGAGGCAGAACGGACTCGCGGGGCACGACAATGATCATGATAGTGAAGTGGAAGCCCTCCGCAAATCGGTATCGGATGCCAAAGCCCGGGCCGCCCGAGCAGAAGCCGAAGCTGCTCTTCACGCCGCGGCCGCCGCGAGACTGGAGGCCCAAGTCGCGAGGCTGAAAGCCCGTCAGGACCATCAGGACGATAACGAGGAGCAGCTGAAGCAGGAGAGGAGAAGGCTGCAGCGGGAGGCGCGGGAAGCTCTGAACCGAGTCGAAGAGTTGGAGACGGAGAACAGCCACCTCACGAAGCGACTGGACAAACTGAAAAACGCCAAGTCCGCCCTCCTGAAAGACCTGTGA
- Protein Sequence
- MRKETLRQAEQRLAARRAARAEAREIRMRELERQQREQENNADKAYDMYTETVSRRGGSRLAALGPATAGVLSPRRSSEDSADDGYAAKDLRHEMKEMEEKFRKAMILNAQLDNDKAALGYQLELLGDRLEELREDHAQLQREHKEKCSSHERLKREHASTERELACARDAIRARDAAAAAAGRAFVDASCAKEDGMEDVAPGEGFGSVPPLALVSHESEKTLNDAGEGTLDVRLQKLVASKTALESEVRKLKLQLNDERAARQNGLAGHDNDHDSEVEALRKSVSDAKARAARAEAEAALHAAAAARLEAQVARLKARQDHQDDNEEQLKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -