Basic Information

Gene Symbol
SNAPC4
Assembly
GCA_907269095.1
Location
OU026140.1:12627054-12629453[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 7 5.1 9e+03 -2.2 0.1 36 45 83 92 82 93 0.84
2 7 2.1 3.7e+03 -1.0 0.0 22 33 224 235 220 240 0.80
3 7 8.9e-08 0.00016 22.6 0.2 1 44 255 300 255 302 0.89
4 7 6.9e-10 1.2e-06 29.4 0.2 2 44 309 355 308 357 0.95
5 7 5.6e-12 9.9e-09 36.0 0.0 1 43 361 403 361 405 0.97
6 7 0.00018 0.32 12.0 0.0 4 44 417 459 415 460 0.92
7 7 9.2 1.6e+04 -3.1 0.4 6 14 538 546 537 546 0.85

Sequence Information

Coding Sequence
ATGGATTATTATTTCGATAGCGATAGCGATTATGAACAGGAACTGCTTGAATTAAATCAACTGAATGCCATTTTAGAAGCAGAAAAACTATCAACTGGAAGTGCGTGTCAATATTCTACTATTAGTGCATTCGGCTTATCCTCAAAGACTCAAGAAGAATACTCTAAGATAGAGCATGCATTAGCTTTAAATAAAGAAACAGATGATAAATATCGACAGCTTGAAGGAATAATTTTTAGTCGTCTAAATGAATGTCGCGAGAGGCTGAAAAAAATAAAAGGATATCCAACTGCACTCGATGAGCGTGAGAAGAAGTTCAGGTACATCAATTGTGGTAAGCCATATTTTAAAGGGCCTGACAACTTTGTACCCCCCAACAATGAAGATACCATTCTTATGGCGAAATCAAATATGTGGGACATGTCCAATGTCACCACTGTTCCGGGCTGGACTGTCAAAGACAAAACTCAGTTTTTAATTTTACTGCATAAACAGTCTGTTAAATTACAAAAGGAAAAGAACGCGTCCAGAATTGCTCAATTGAAACGTGAAAATAAAGTAAAACCCATACAAGATATTAAAAATATGATATCAAAGATAAAAGAAGAAAATTCTGCATTGGAGAAAAAGTCCTTATCTCAAATTGCACTTCCAATTAATGAAGAGTACGATTGGGACTTGATTGCTAATAAAACAAATTACAGACATAGTGCTCAAGAATACCAATCTCTGTGGAAGTTGTTCTTGCATCCTAGTGTCAATAAAAGTAACTGGAGCCAGGCAGAACATAAAAACTTGAATAGAATAGCTCACTACCACAAAATGACTGGGTGGGACCAGATTGCTCGAGAACTCAAAACAGGCAGAACTGCCTATCAATGCTTTGTTTATTTTCGAACCAATGTGAGCAATTCATTCACTGGTCAAAAATGGTCGAAAGAAGAAGAAGAATATCTTAGGAGGTTGATCGATTATTTCAAAGAAGATTATTACATTCCTTGGAGCAAAGTTGCATCTTTAATGGAAAATAGGACAAAAGTTCAGATTTATAATAAGTATTTCAGACTGATGGAGCTCCGCAAAGGGAGATTCCTACCTGAGGAGGATGCTGTAATTCTTACTTGTATTAAAGACTTTGGCTCTGATTTTAGAAGAATAATGAAATATTTACCTGGCCGTTCCAATGCACAAATACGCAACAGATATCGTGTGCTAGCTCAAAGCGAAGCTACTAAAACATCCACAATTTGGACTATAGAAGAAGACAAAAAACTGATCCAATTCATGGCAAACCAAGACTCATCATTTAACTATTCCAGCTTGAGGTGTCATTTCCCAGGCAAGGATAGATCTCATATCCGAACTAGGTACATGACACTGAGTAAATGGATGAGAGGGCATCCTAATGCAGATATTGAAAAAGCACCAAGAAGAGGTGCACGCAGACTTCGTCATGGAGAGGCTTCAAAAGATCTAAACAAAGCCGTAGAAAACCTAAAGGATCGAATGCAATCTGAAGTTGATCACATGAGATCAACAAGAATTACAAAAGATTCTCCCGAAAATGATATTGAAACAGCAATTATTGCTGCTGTGATTAATGCACAAAACGAAGAAGAACAAGAAAAGCTAATAAATAGTGACAGTGAACAGCCGGAGACAGTCAATGCTATGGGCACTGCTGTTCCCCCCAATATAAACCAGATCAAGCAAATTCTCATTCTGTTGGGCTCAAAGTTAGATAAAGAAGCATTTAAAGCACAATATAATGAGAAGTACCCTAAGTACTCCGAACTGGTTGAGAACATGGAAAAGTATATTGTAATAAAATCTTACTCCAAAAAGAATTCAGTGAAGCTTGTTGATGCAATCACTCCTAGTATATGGGGAGATAATGTATTAAGTAAATTAGAGCATGTCCTACCTCCTAACTATGACACCATAACAGGTTGCAAGCAATTAATGTCACATATAACTTCAAAGCCACGGAATAATGATAATGTCAATTTAACTATACTTGCAAAGAGAAATGTTGTATTGCAAGAACAACTAGATCTGTTAATGGACAGGTTCAGGGTGTTGTTTCTGTGGCCAATGATGCTAAGCAATGAGATGCCTAATTTTCACAACAGGCCACCACCAACTGCACCAACATATAAAAAAAAGCGTGGGACGGTTTTAGCAGGTGATCCGGGAATAACGATTCCTGCATGGAGTACCGGAATCATCAATGAGAAAATTGATTTAGATGAAACTGAAGAAACCAAAGATATTGTTTTGACGCAAGATTTTGGGGATCAAGCCAGTTGTTCATATAAAGATGAAGCTAGTTGTTCATATAAAGATAAAGCCAGTTGTTCATATAAAGATGAAGCCAGTTGTTCATATAAAAATCTTTAA
Protein Sequence
MDYYFDSDSDYEQELLELNQLNAILEAEKLSTGSACQYSTISAFGLSSKTQEEYSKIEHALALNKETDDKYRQLEGIIFSRLNECRERLKKIKGYPTALDEREKKFRYINCGKPYFKGPDNFVPPNNEDTILMAKSNMWDMSNVTTVPGWTVKDKTQFLILLHKQSVKLQKEKNASRIAQLKRENKVKPIQDIKNMISKIKEENSALEKKSLSQIALPINEEYDWDLIANKTNYRHSAQEYQSLWKLFLHPSVNKSNWSQAEHKNLNRIAHYHKMTGWDQIARELKTGRTAYQCFVYFRTNVSNSFTGQKWSKEEEEYLRRLIDYFKEDYYIPWSKVASLMENRTKVQIYNKYFRLMELRKGRFLPEEDAVILTCIKDFGSDFRRIMKYLPGRSNAQIRNRYRVLAQSEATKTSTIWTIEEDKKLIQFMANQDSSFNYSSLRCHFPGKDRSHIRTRYMTLSKWMRGHPNADIEKAPRRGARRLRHGEASKDLNKAVENLKDRMQSEVDHMRSTRITKDSPENDIETAIIAAVINAQNEEEQEKLINSDSEQPETVNAMGTAVPPNINQIKQILILLGSKLDKEAFKAQYNEKYPKYSELVENMEKYIVIKSYSKKNSVKLVDAITPSIWGDNVLSKLEHVLPPNYDTITGCKQLMSHITSKPRNNDNVNLTILAKRNVVLQEQLDLLMDRFRVLFLWPMMLSNEMPNFHNRPPPTAPTYKKKRGTVLAGDPGITIPAWSTGIINEKIDLDETEETKDIVLTQDFGDQASCSYKDEASCSYKDKASCSYKDEASCSYKNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00208827;
90% Identity
iTF_00207862;
80% Identity
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