Basic Information

Insect: Biston stratarius
Gene Symbol: -
Assembly: GCA_950106695.1
Location: OX467117.1:23092156-23103717[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 4.8 3.5e+02 2.4 0.1 2 23 110 131 109 131 0.94

2 20 0.00064 0.047 14.6 0.3 2 23 135 157 134 157 0.89

3 20 3 2.2e+02 3.1 1.8 1 23 207 229 207 230 0.94

4 20 0.018 1.3 10.1 2.5 3 23 380 401 378 401 0.95

5 20 3.7 2.7e+02 2.8 0.0 3 19 411 427 409 429 0.95

6 20 0.12 8.5 7.5 0.2 2 23 440 461 439 461 0.94

7 20 0.75 54 5.0 2.1 5 23 512 531 510 531 0.95

8 20 0.067 4.9 8.3 3.2 2 23 540 561 539 562 0.94

9 20 2.8 2.1e+02 3.2 3.5 1 23 569 594 569 594 0.89

10 20 0.33 24 6.1 1.1 2 23 604 626 604 626 0.91

11 20 4.9 3.5e+02 2.4 2.9 1 23 631 654 631 654 0.95

12 20 0.0012 0.086 13.8 4.2 1 23 660 682 660 682 0.97

13 20 5.4e-06 0.00039 21.2 1.9 1 23 689 711 689 711 0.99

14 20 8.7e-05 0.0064 17.4 2.3 1 23 716 738 716 738 0.96

15 20 0.0014 0.099 13.6 2.4 1 23 744 766 744 766 0.97

16 20 2e-06 0.00015 22.5 1.2 1 23 772 794 772 794 0.97

17 20 3.4e-05 0.0025 18.6 2.2 2 23 801 822 801 822 0.98

18 20 0.005 0.36 11.8 0.4 2 23 832 854 831 854 0.97

19 20 0.00036 0.026 15.4 1.1 1 23 859 881 859 881 0.99

20 20 0.0028 0.2 12.6 4.7 1 23 887 910 887 910 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	4.8	3.5e+02	2.4	0.1	2	23	110	131	109	131	0.94
2	20	0.00064	0.047	14.6	0.3	2	23	135	157	134	157	0.89
3	20	3	2.2e+02	3.1	1.8	1	23	207	229	207	230	0.94
4	20	0.018	1.3	10.1	2.5	3	23	380	401	378	401	0.95
5	20	3.7	2.7e+02	2.8	0.0	3	19	411	427	409	429	0.95
6	20	0.12	8.5	7.5	0.2	2	23	440	461	439	461	0.94
7	20	0.75	54	5.0	2.1	5	23	512	531	510	531	0.95
8	20	0.067	4.9	8.3	3.2	2	23	540	561	539	562	0.94
9	20	2.8	2.1e+02	3.2	3.5	1	23	569	594	569	594	0.89
10	20	0.33	24	6.1	1.1	2	23	604	626	604	626	0.91
11	20	4.9	3.5e+02	2.4	2.9	1	23	631	654	631	654	0.95
12	20	0.0012	0.086	13.8	4.2	1	23	660	682	660	682	0.97
13	20	5.4e-06	0.00039	21.2	1.9	1	23	689	711	689	711	0.99
14	20	8.7e-05	0.0064	17.4	2.3	1	23	716	738	716	738	0.96
15	20	0.0014	0.099	13.6	2.4	1	23	744	766	744	766	0.97
16	20	2e-06	0.00015	22.5	1.2	1	23	772	794	772	794	0.97
17	20	3.4e-05	0.0025	18.6	2.2	2	23	801	822	801	822	0.98
18	20	0.005	0.36	11.8	0.4	2	23	832	854	831	854	0.97
19	20	0.00036	0.026	15.4	1.1	1	23	859	881	859	881	0.99
20	20	0.0028	0.2	12.6	4.7	1	23	887	910	887	910	0.97

Sequence Information

Coding Sequence: ATGTCTTCCGATGATTCTGAGGATGAGCCCTTGTCCGTCTTGGCAGCGCTGAAAAAACGAGACGAATCAGGGCTTGAAATACACCCAATAATTAAAAAGGAAGGTTCTACGTCGAAACtcgaaataaaaaaggaatgcGACATATCTATAACAATTCAGCAGTTGCAGAGTGGGCTACTACCGGCGATTGTCGAAAGGCCGACAGATGTATGGTTGTATTTAACAGATTTTAATTTGACCGGGCCGTATACTTGCCTCCTGTGTTCTGAGTGGTTCATTAATAGGAATAGAATTGTCATACACTATGTGATCGATCACAAAAAAGATTACTGTGGTATCTGCAGaTACTTAGTACCAAATCGAGAAGCATGGTGGGAACATCAAAAATTTCATATTCCATGGAAATGCTCACAATGTACTGAAAGCTTTCCAGTTCAGTCAGAGCTTCGTAAGCATTTCAGTGCTGCTCATAATCTTGTTCACTGCCACTTCTGCTATTTGCGCCTTCCTGATGGTGACCAATATCACAAGCATTTGCTTCAAAAACATAGTGTCACCAAAGTATCTGGTATTCATGGAGAAAGTCTGTGGGATTTCGAATGCAAAGGCAACCAGAAATTTCGGTGCCTACTCTGCTCAAAGACAGTCAATGTTGGTCGACAATTTGCCGATCATTTCATGTCTCACCATCACTTTACTCTTAAATGCTTCATGTTCTATGTTGCCGGCATAGATCTGCCGTTTAAAGTAAAAGGTGCAGAGTTAACACCAGATTTTGTTGACACGCAACTCAAAGCATATAGCACTTTTGGTTATGTTGATTTTATAAAGAGCCTGAAGTTCAAAGAAGAATCTGTGACAGTTACTGAAGAAATTCCAATCACAGTTGATTGTGAACCAGAGTTTAAGGAACTTagtgaaaatgatgatgatggtgaagatTTAAAGCTCAGCGaggaaataaaatgttacaGAGGAATTCCTGACTTTGATGTTTCacatatagaaataataacaaCACAAGAATGCTACTCTGAATATGTTGAAGGAATGTTAATCAAACTAAACTCAAATGTAATACCTGTATCATCAGAAATTACCTACCCAAATTTTGCCATTGAATCAAAGCCAATCAACTGTTGCCTTTGCACTGAAGtttttatgaaaagaaataatttggAAAGCCACATGACTAAATCTCATGGCATAAAAGCCCTGCCGATTTATTGGTGTAGAGTTTGTGCTGCAGTATTTGACAGCTTCTCAGAGTTGGAGATTCATTCTGCACAAGAATTAGGTGAATTCGACGGTCTGTGGATTTGTCAGTTCTGCGATCAAGAGTTTGATGGTCGAGAAGAGATTAGGAAACATTTGACAGAACACTGGGATGAATTACAGTATGATAACTGCTTCAGTCCACACCAAGGATTCAAATGCAAGTTCTGTCCGACTCTCTTTTGGAATGAGACTGACAGAGAGTCTCACCATGTTAATGTGCACTCTGAAAAGAACAAGGGCGACTTTTATCACTGTATATGTGATGAGGTTTTTGGTGAtaagGTCTTTTTCATTCATCACTATCTAACTAAACATAATTGTGATACTCAATATCTCCTAAAATGCTGCATTTGTTCCATTGTGTTTGAATATGTAGAGGACTTGAGGAATCACTTTAAAAACCATCATCCTgaagccaaaaaaatattttgttgcttGGATGATTGCAAATACAGGCCTTTTAGCCAGAGGAAATCTTTCCTTATACATTTGAagTCATTCCATGATCCGATATCTCGGCCCCGTCCGGCAACCTGTGAGACGTGCGGCCTAGAGTTCAGTACCGCTAAAGCTTGCTCCCAGCACGCTAACAAAGTACACGGACCTGGCAGGTTCCATTGCACTCTCTGCGAGGAGATGCTGCACACTAATGACGAAAGAAAGATCCACTACCTCGTCCGTCACCCGGGCAGAAACCAGTACCAATGCCACGCGTGCGATAAGTCCTTCCAATACAAATCGTCGCTCTACATGCATAAACAGGAGCATTCGCCGTACAAGAAGGATTATACTTGCAGTTATTGCGGGAAGAATTTCATGAAAAAAGATTCCTACAGAGAACACATGATGATTCACGAAGCGCCGCGACACGCTTGTTCGTATTGTCCGATGCGGTTCGTGCAACGCTCCAACATGCTGCGCCACGAACGGAGGCATACCGGAGAGAGACCCTACGCCTGCCAGTATTGTCCAAGGACCTTCTCCGATAAAGGCGCTTGTACTTCGCATTCCAGGACACATATAAAGACTACATCGTTCGCATGCGTTTATTGTGGACAAACCTTCGTGCAGAAATCCAAGCTTACTTATCACATACGGAAGCACACTGGAGAAAATTTGGAGACATGCACGGTGTGCTCGAAAATATTTACAAGCGCGTGCTCATTACGAGAACACATGCGTATACATCAAAGAACGAAATTGAAGAAGACAATCAAATGTCCTCTTTGCAAGAACATGTATTCCATGGAGCGTGACATGCTACGTCACATGCGCTCAGCGCACACTGGTGTACAATTCAAGTGTCCACTGTGCCGGAAATGTCTACAAAATCCCGGCTCGCTACGGGACCATGTGTTGACTCACAGCCGTGTCAACACTTTCCAGTGCAAACTCTGCCCGAAATCTTACCACACGAAGAAGTCCATAACTAAACACTTAGAAAAACGTCATGATATAGAACCTATTAATACTCAAAAGCATTACCGGCATCTTGAGCCCAAAGAATGCGAGCTGGGTCTTGACGATGATGTCATGGAAAAGATCTTTGGTAATACCAAAAAGACAAGAAAGACGGAAGTTATGTATGAAGGCTTTGCCACTTATAATAATGGTATTCAGCTGTCAAAAGAAACAAGTGACTACAATCTTGTAGATAAACAGAATGCAGGAACATCTTATGTACAAAGTGTCGAAGTAAAACTGGAACCGGAAGATGATGAAGACATTGAGGAGGTGCCTTCACCTGACTTCGTTAACGTGAAGATAGAGAGTATGGAAGAAGAATAA
Protein Sequence: MSSDDSEDEPLSVLAALKKRDESGLEIHPIIKKEGSTSKLEIKKECDISITIQQLQSGLLPAIVERPTDVWLYLTDFNLTGPYTCLLCSEWFINRNRIVIHYVIDHKKDYCGICRYLVPNREAWWEHQKFHIPWKCSQCTESFPVQSELRKHFSAAHNLVHCHFCYLRLPDGDQYHKHLLQKHSVTKVSGIHGESLWDFECKGNQKFRCLLCSKTVNVGRQFADHFMSHHHFTLKCFMFYVAGIDLPFKVKGAELTPDFVDTQLKAYSTFGYVDFIKSLKFKEESVTVTEEIPITVDCEPEFKELSENDDDGEDLKLSEEIKCYRGIPDFDVSHIEIITTQECYSEYVEGMLIKLNSNVIPVSSEITYPNFAIESKPINCCLCTEVFMKRNNLESHMTKSHGIKALPIYWCRVCAAVFDSFSELEIHSAQELGEFDGLWICQFCDQEFDGREEIRKHLTEHWDELQYDNCFSPHQGFKCKFCPTLFWNETDRESHHVNVHSEKNKGDFYHCICDEVFGDKVFFIHHYLTKHNCDTQYLLKCCICSIVFEYVEDLRNHFKNHHPEAKKIFCCLDDCKYRPFSQRKSFLIHLKSFHDPISRPRPATCETCGLEFSTAKACSQHANKVHGPGRFHCTLCEEMLHTNDERKIHYLVRHPGRNQYQCHACDKSFQYKSSLYMHKQEHSPYKKDYTCSYCGKNFMKKDSYREHMMIHEAPRHACSYCPMRFVQRSNMLRHERRHTGERPYACQYCPRTFSDKGACTSHSRTHIKTTSFACVYCGQTFVQKSKLTYHIRKHTGENLETCTVCSKIFTSACSLREHMRIHQRTKLKKTIKCPLCKNMYSMERDMLRHMRSAHTGVQFKCPLCRKCLQNPGSLRDHVLTHSRVNTFQCKLCPKSYHTKKSITKHLEKRHDIEPINTQKHYRHLEPKECELGLDDDVMEKIFGNTKKTRKTEVMYEGFATYNNGIQLSKETSDYNLVDKQNAGTSYVQSVEVKLEPEDDEDIEEVPSPDFVNVKIESMEEE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00666804;
90% Identity: iTF_00206387;
80% Identity: -