Bstr007279.1
Basic Information
- Insect
- Biston stratarius
- Gene Symbol
- -
- Assembly
- GCA_950106695.1
- Location
- OX467109.1:18270000-18281129[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.015 1.1 10.3 1.8 2 23 207 229 206 229 0.96 2 28 0.0018 0.13 13.3 0.7 2 21 266 285 265 286 0.92 3 28 0.00011 0.0078 17.1 0.4 2 23 323 345 323 345 0.97 4 28 7.2 5.2e+02 1.9 0.3 2 13 378 389 377 398 0.82 5 28 0.0017 0.12 13.3 0.4 1 23 408 431 408 431 0.96 6 28 0.98 71 4.6 0.1 1 23 447 469 447 469 0.94 7 28 0.00025 0.019 15.9 1.0 2 23 511 532 510 532 0.95 8 28 0.0001 0.0075 17.1 3.4 2 23 573 595 572 595 0.97 9 28 8.9e-06 0.00064 20.5 1.3 1 23 645 668 645 668 0.97 10 28 0.0042 0.31 12.1 0.2 1 23 725 747 725 747 0.97 11 28 0.025 1.8 9.6 9.0 1 23 758 780 758 780 0.97 12 28 0.26 19 6.4 0.8 2 23 792 813 791 813 0.92 13 28 0.0036 0.26 12.3 1.0 1 23 823 845 823 845 0.98 14 28 0.2 14 6.8 2.0 2 23 873 894 872 894 0.95 15 28 0.0015 0.11 13.5 3.8 1 23 905 927 905 927 0.96 16 28 8e-05 0.0058 17.5 0.3 1 23 935 957 935 957 0.97 17 28 0.0027 0.2 12.7 0.2 2 23 977 999 976 999 0.97 18 28 0.053 3.8 8.6 0.6 1 23 1017 1039 1017 1039 0.97 19 28 0.7 51 5.1 2.1 1 23 1046 1068 1046 1068 0.94 20 28 0.04 2.9 9.0 0.9 2 23 1079 1101 1078 1101 0.95 21 28 0.017 1.2 10.2 0.1 2 23 1124 1145 1123 1145 0.95 22 28 0.051 3.7 8.7 0.2 2 23 1226 1247 1225 1247 0.91 23 28 0.1 7.3 7.7 1.1 5 23 1257 1275 1255 1275 0.92 24 28 0.018 1.3 10.1 0.7 2 23 1286 1308 1285 1308 0.94 25 28 0.4 29 5.8 0.5 2 21 1325 1341 1325 1343 0.73 26 28 0.46 34 5.6 1.9 2 23 1416 1437 1415 1437 0.93 27 28 0.0043 0.31 12.0 0.8 2 23 1448 1470 1447 1470 0.97 28 28 1.4 1e+02 4.1 0.9 2 20 1508 1526 1508 1528 0.93
Sequence Information
- Coding Sequence
- ATGGCCCTCAAACTTGGAAAATGCAGGCTATGTCTTAAGCTCGGTGATTTCTACTCCATTTTTACGGTTGATAATGCCGTCCAACTTGCAGAGATGGTTATGGACTGCGCAAGGATAAAAGTATATGAAGGAGATGGCTTACCAGATAAAGTGTGTGCCGAGTGTGTACAAAAGCTCAGTAGTGCCTATATATTCAAACAACAGTGTGAGAGAGCTGATCAGGAGTTGCGGCGGAACTATGTACCACCTCCAGGCTTCAGTATCAGCCCACCACCTCCGAATAGACAAAGTAGCGATTCAGCATTTTCGACGCACACTGACAGCTCTAATATAAAGTCGTCATTCATAGAAAGCAAAGTAACAACGGTTAAAAGAAATAGGAAGCGAAGCGTTGAAAGCGATAATGCGTCTGAAGCTAGTCGATTACAGGACTACGGCCGACCTAGCAGCTCTAAACGCGTCGAAGAGCTTCGCAGAACGCAGAAAAGGCCTCGTCTTTCCGTCAACAACTCAAACAACTCTCAGTGTGATTCCGATTACGAAGACAACGGAGGCTCCAGCTATGTCCCGGAGACGGATAATGATTCTGACGAACCGCTCATCAACCCCAACGAAAACAAATGTGACTTTTGCAGCAAAACTTTCCGATGGAGGAAAAGCTTGAAGGCCCACGTGAAGAATGTCCATGGAAAGAAAGATTTGAGTTTTGACGCCATCGTCGCTGGTAAATCCGTCACTGCCGTCAATCCACCTAAAAAATCTACCGATACGAATTTCAGCGACGATGAGAAGCTGAATTGCTCTCGATGCGACAAAACTTTCAAATTGAAGATTATGCTAAAGAGACATTTAGAAACATGCACGGGAAAGTCGCCTCTGAAGTTACCTGCAATGTCACCGCAAAAAGAGCTGTTTATATCCTTGGAACCAATAGATGCCGTACATAAGATTACGGTAAAGAAACCTACCTGCGAGTACTGCACGGCCAAATTCAAAACCGTAGAAAATTTGGAGAAACATCTTAGAATCGTCCATGCGGCTGTTCTGAAGAAAGAAATCGACACGAAGGTGACAAAGGCTGGTCCGAAACCCGGCCTGAAGTTCAAGGAGGGCTCCAACGTGTTCACTATCCCATGCGTGTACTGTCAGAAGCCGTTCGATGATTACTATGTACACCAATCTCACTTCAATACATGTCCACAAAAGGACATGCGATCTGTTTTTGAATGTCCGATCTGCCAGAAAATATCAAGCCGGAAAAATGGGTACTTCATCCACTTAAAAAACATCCATTTCGAACCATGCATGATGAAGCACGAGGATTCGTCAGCTTCCTCCTTCGAATGTCGAATATGCAGTAAGAAACTGCTCTCTCAGGAAATGCTTGTCACTCATTTGGCAGCTCACGCATCAAATATAGACGACGATAACGACGAGACCGCTCACGACGATGGTGATTCGAGACAGAGCATCTTTGAAGATTCAGCATCCATGCACTCTGCTCACAGCACACCTGCCCCCAGCGGCCTAAAATGCAGTGTGTGTGATAAAGAGTTCAAGTATCGCAAGTCGCTCATCACCCATGAGGCAAAACACACAGAAGACGAAATGCGAGTAAAAAGTGAACCTCCAGATAAATCATCAATGAGTTTACTAAGTGAGACCAACCGGGAGTCTGATTTTGAATCTAGTCAAGACGATGAGACGGACGACCTAACCTGCGACATCTGTGAGAAAATGTTCTCCTACAAACGCCTCCTCGAGCACCACAAGAGAACAAAGCACAATATGTCATCCGGGACGAAACGAGCGAAAATAAACCTTAAAGACTGCTCTGTGAGGTGCTTGCTCTGTGACTTGGAGATGAAAGTCAGCGCTATCAATGAACACAATCAGAAGCATATCTCTATGAATGTAAAGCCACGGAACATATATACGTGTGCGGAATGTGGGCAGAAGTTCAAAAGTTGTAGCAATTTGGCGAGTCATATTAAATTAGTTCATAGGTTGAAGCACACGCAAGAGCAGGTTCCGCGGCAGTTCCTGGGAACGGACCTGGCGGATTTTTGTGAAGTCGTTGTGACGAAGGCGGAACCCCTGGACCACATCCAGAGTCACAACGGCTTTGGCGAGGTTCCGTCTCAGGCGGCTCCAACAGTGGACCTCAGCGGGTTCACGTGTCCAATCTGTAGCAAGAAGATGCCCACGCTCATCTCACTGAAGCGTCACGTCAACTGGCACTCGTACGTCGGCGCCAATCTTGAAAAGAAGCACGAGTGCTTCGTCTGCAAAGAGACATTTAGGTTCCAGTGCCACTTCAAGATCCACATGCGTGAACACTACCACGACCCTAATATCGACCCGGTTCTTCTCACTTGCTCCATCTGCGGTCGCAAGAGCAAGCACCTCCGCGCAGCCCAGGCACACAACAACTGGCACAAACAAACGCGTTTCCAGAACAAAGACTACCAGTGCTCTATATGCAAACGCGTCTTTCAATACAGAAAGGTCTACTTATCCCATATGGCCATACATTACAAGAAGGGAGAGAGTGCCATGAATACTGTAGTCGGAGATGTGCATTGGGCAGATAATGGAACCATAGATGGGACCACTACGTGCAACCTCTGCGGGAAAGTTTGCCTGTCCGAAATTTCTTTGAAGCATCACCTCATTTGGCACAAATCGAAAACTCTGTTGTACGGAGCGAGGCACGATTGTCAGATGTGTCAGCTGCAGTTTACCAACAAGCGACATTTAGAGCTGCACATTCGAGCGCATTACGAGGACGAGAACGGCCCGTTCAAGTGCAATATCTGCGGGAAAGGTTATATCGATGAAGAGTACATGCGGCGGCATGTCAAAGGGCACAATTTCGATCACTCCTCGCATAAGAAGCGGCTCGAGAAACTACGCAAAGATAAAGTGAAATGCCCGATTTGTTCCCGGTACTATCCCGACTTGGTGCGACTGATTCGACATCTACGGCGAACGCATCCCGAGTCGAAAATGATCAAGGAAGACCCGGACGCGCCGCCTCCTGCCTATTTCTCTTGCAAGCTCTGCGCTAAAGTGTTTCTAGACGAGTCTCGACTGAAGAAACACGAAGAAATGCACTTACGGAAGCCAAACTTCTTCCGATGCAAGTTCTGCGGTCGCAAGACGATCTCTCTGAAAGCGCACAACGTACACATCAAAGCGCATCTGACGAGGAAGCACGTGGATAACCCGCTGAAGTGTCCGCAATGCGAGGAAGTGTTTATACTCGGATACGCGCTTCACCATCATTTGAGAGACACGCATGGAGTGAACGAGACGTGGATCTCTGAACGAGCGGACGCGCCCCTCGCAGGACCTCTTAAAGAGTTGCAGTGCGCGGTTTGTTTGAAAGTCCTCGCTAGTAAAGGCAACTTCGAACGGCATCTCGATTACCACAACTCTTTGCGCTGCAATTATTGCTATGATTACTTCGGCGGGCTGCGGTTCCTGGAGGGACACTTAGCGTTCAGCTGTGAGAAGAAGAAGCTCGTCGGCGACACGGAGGTGCATCCGCGGCGAATCAAGTGCGAGCTATGCTATAAGGCGTTCCATCTGCAGGTGAAGCTGGACTGTCACCTGCGGGCGCGGCACGGCGTGGCGGTGGAGAGACGCGCCGGCGCGGCGAGCGCGGACACCGTCTGCGACTACTGCTTCCGAACATTCGAGAACGAGTACGCGCTCGCCGGACACAAGGTGTACCACCGCTCCGTCGGCTACTTCGGCTGCATCTACTGCCCCAGGAAGTTCAACACGCGCGCCGCCTACAACAGGCACAAGACTCAGCACCTCTACACGCTCAACGCTGACGACCCGACCAAATGCGAGCACTGCGACGAAACGTTCGTCGCCTTCCGGGACATGATCGAGCACATGAAAGACGAGCACGGGGACGACAAAGAGTGGATCATAGAGCCGAAGGAGTCTGTAGAGGAGAAGTGCCCCATATGCGAGAAAATGTTCTACAATCTACCGCGCCATCTGCAGTACCACGAGGAGAACAAGTGCAAGAAATGCAGCGAGTACTTCCACTCGAGGCTCGAATACGATAGCCATCTGTGCGCGATCGAAAGCGACGCCGAGGAGGAAATATTCGGCGGAGACACGCCGGCGCGAGTTTACGAGGAGTGCACCTTCTGTTTCAAGCCGATCACCAAGAAGGACTCGAAGAAGAAGCACGACATCTTACACAAGACGTCGGGCGCGATCTCGTGCCGGTTCTGCCACCTCAAGTTCAAAACCATCGACGCGTTCAACATTCACGCGTTCTCTCACCGCAGCCGCAAGTACGTGAAGCGGCCGATCAAATGCCGAGTGTGCAAGGAGCGCTTCGTGAAGTATGGCCCTTTCATGAAGCACATGAAAACCGCGCACAAATCGACAAAGAAGTTGCATTACCGGGCGACGGTGAAGCCGGAGCGATGCGTCGTCTGCGGGGAGTTCCTGCCGAACTTGCACAACCACTACCGCGCGCATCTCCTCAACCGCTGCCAGCTGTGCGCGAAATACTTCATTTCCTCCCGACTGTACGCGCGACACGAGTGCGACAAGGAAGACGCCGATCCTTCGAAAGTGTTCACTTCCGACGTGGACCTGTCGGCGCTCATAGCTTCCTACGCTCCCAAGGACGAGAAGGACGACGAGAAGTACTACGGGTACACGGACGACGAGGAAGACGCGGAGCCGGACGCGGAGCCGGAGGACTTCCCGGCGCAGCCGAAGGCTAAAATCGTCAAGACTTTCTCGAAAGCTAACTCGAAGCTGGCGAAGCGACCTCGAGTCGGCGAGCTGCCGAGGTCGCAACCTATAGACAGCCAGCTCGCGGAGGACGAGCGCAACTTGCACATGATGGTACAGTCACCGATCATATCGGACGTGCTCTCGCTCTACCAGAAGAAGGAGATCGACGGGGACTCCAAGAGTCAGACGAGTCAGGTCGACGACATCGTCGACCTTAGCGATGATTCGTTGGACGCGACGGATTTGAACGTGCCCGTTGTTGTCATCGACGACTCTAGTTAA
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTVDNAVQLAEMVMDCARIKVYEGDGLPDKVCAECVQKLSSAYIFKQQCERADQELRRNYVPPPGFSISPPPPNRQSSDSAFSTHTDSSNIKSSFIESKVTTVKRNRKRSVESDNASEASRLQDYGRPSSSKRVEELRRTQKRPRLSVNNSNNSQCDSDYEDNGGSSYVPETDNDSDEPLINPNENKCDFCSKTFRWRKSLKAHVKNVHGKKDLSFDAIVAGKSVTAVNPPKKSTDTNFSDDEKLNCSRCDKTFKLKIMLKRHLETCTGKSPLKLPAMSPQKELFISLEPIDAVHKITVKKPTCEYCTAKFKTVENLEKHLRIVHAAVLKKEIDTKVTKAGPKPGLKFKEGSNVFTIPCVYCQKPFDDYYVHQSHFNTCPQKDMRSVFECPICQKISSRKNGYFIHLKNIHFEPCMMKHEDSSASSFECRICSKKLLSQEMLVTHLAAHASNIDDDNDETAHDDGDSRQSIFEDSASMHSAHSTPAPSGLKCSVCDKEFKYRKSLITHEAKHTEDEMRVKSEPPDKSSMSLLSETNRESDFESSQDDETDDLTCDICEKMFSYKRLLEHHKRTKHNMSSGTKRAKINLKDCSVRCLLCDLEMKVSAINEHNQKHISMNVKPRNIYTCAECGQKFKSCSNLASHIKLVHRLKHTQEQVPRQFLGTDLADFCEVVVTKAEPLDHIQSHNGFGEVPSQAAPTVDLSGFTCPICSKKMPTLISLKRHVNWHSYVGANLEKKHECFVCKETFRFQCHFKIHMREHYHDPNIDPVLLTCSICGRKSKHLRAAQAHNNWHKQTRFQNKDYQCSICKRVFQYRKVYLSHMAIHYKKGESAMNTVVGDVHWADNGTIDGTTTCNLCGKVCLSEISLKHHLIWHKSKTLLYGARHDCQMCQLQFTNKRHLELHIRAHYEDENGPFKCNICGKGYIDEEYMRRHVKGHNFDHSSHKKRLEKLRKDKVKCPICSRYYPDLVRLIRHLRRTHPESKMIKEDPDAPPPAYFSCKLCAKVFLDESRLKKHEEMHLRKPNFFRCKFCGRKTISLKAHNVHIKAHLTRKHVDNPLKCPQCEEVFILGYALHHHLRDTHGVNETWISERADAPLAGPLKELQCAVCLKVLASKGNFERHLDYHNSLRCNYCYDYFGGLRFLEGHLAFSCEKKKLVGDTEVHPRRIKCELCYKAFHLQVKLDCHLRARHGVAVERRAGAASADTVCDYCFRTFENEYALAGHKVYHRSVGYFGCIYCPRKFNTRAAYNRHKTQHLYTLNADDPTKCEHCDETFVAFRDMIEHMKDEHGDDKEWIIEPKESVEEKCPICEKMFYNLPRHLQYHEENKCKKCSEYFHSRLEYDSHLCAIESDAEEEIFGGDTPARVYEECTFCFKPITKKDSKKKHDILHKTSGAISCRFCHLKFKTIDAFNIHAFSHRSRKYVKRPIKCRVCKERFVKYGPFMKHMKTAHKSTKKLHYRATVKPERCVVCGEFLPNLHNHYRAHLLNRCQLCAKYFISSRLYARHECDKEDADPSKVFTSDVDLSALIASYAPKDEKDDEKYYGYTDDEEDAEPDAEPEDFPAQPKAKIVKTFSKANSKLAKRPRVGELPRSQPIDSQLAEDERNLHMMVQSPIISDVLSLYQKKEIDGDSKSQTSQVDDIVDLSDDSLDATDLNVPVVVIDDSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00634735;
- 90% Identity
- iTF_00206324;
- 80% Identity
- -