Bstr004459.1
Basic Information
- Insect
- Biston stratarius
- Gene Symbol
- Zfa
- Assembly
- GCA_950106695.1
- Location
- OX467108.1:1780723-1801720[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.045 3.2 8.8 0.2 2 23 105 127 104 127 0.95 2 18 2.2 1.6e+02 3.5 2.5 1 23 133 155 133 155 0.88 3 18 0.014 1 10.4 0.7 1 23 161 184 161 184 0.97 4 18 0.00042 0.031 15.2 1.6 1 23 195 217 195 217 0.94 5 18 0.0082 0.6 11.1 1.0 1 23 223 245 223 245 0.94 6 18 8.4e-06 0.00061 20.6 1.1 1 23 251 273 251 273 0.97 7 18 9.8e-05 0.0072 17.2 1.4 3 21 280 298 278 299 0.92 8 18 0.0018 0.13 13.3 1.2 1 23 577 599 577 599 0.99 9 18 3 2.2e+02 3.1 3.4 1 21 606 626 606 628 0.93 10 18 0.003 0.22 12.5 0.5 1 23 632 655 632 655 0.94 11 18 6.7e-06 0.00049 20.9 2.0 1 23 662 685 662 685 0.96 12 18 0.0057 0.41 11.7 0.2 2 23 692 714 691 714 0.94 13 18 0.00046 0.033 15.1 1.2 1 23 727 749 727 749 0.96 14 18 0.0002 0.015 16.2 0.2 1 22 755 776 755 780 0.94 15 18 0.00056 0.041 14.8 1.5 2 23 789 811 788 811 0.95 16 18 7.6e-05 0.0055 17.6 2.0 1 23 817 840 817 840 0.97 17 18 6.5e-06 0.00048 20.9 0.6 1 23 849 871 849 871 0.99 18 18 0.0052 0.38 11.8 0.1 1 23 877 900 877 900 0.94
Sequence Information
- Coding Sequence
- ATGGATCTAGACATAGACAGCATGGACAAAACAGTACACCATGAATCTAAACCAATAAAGAACATTATCAGAGGAGAAGGCAAAATCTTCAATGAACTAAgcaaagatgatgatgaaacagtTAATTGGAAATCTGTAATACCAGTTGaaggaaagagaaaaaagaaaattcatGATAAGAAAGCACTTATTTATAAGAAAGCAAACAGCACATATAAGAAACTAAAAATTAGAAAGGAATtagaaaGACGCACATTCATCAGTGTATACACCATCGTCCGTCACGCTCGCACTCATAGTGACTATAATCTATCTTGCTCATATGGCTGTGGATACAGCACAGTGTACCGAGGAGCGCTGTCAGACCATGAGAAACGTCATGAGAAGAACTATAGGTATAAATGTTCCACTTGTGGAGCTGGTTTCCATGTGAAGACTTGGCACGATCAGCATCAGAATATTCACAACAATATTAAACCTTACATATGCGATGTGTGCGGAATGGCCTTTCATATGGACAGgtacctgaCATCTCACCGTACGACGGCTCATCCAAGTGAACTATCCAAAGGAGTTAAACGATTTCTCTGTCCGCACTGTGATCAAGCTTTTGAAACTACCCGCAATTTCAGAACGCATTTAGAGgaacACAGAGGGAAGAAGAAGTTTTTATGTGCTCTTTGCGGCAAGGAATGCGCCACTGGTGAACAATTGAAGCGACACAACAATTCACATTTGGGAATCAAACCATTTGCTTGCAGTATATGCAACAAGAAATTTGCCAAGAAATTCAATCTGTCGGTTCATCAGCGAGCGCACGCCGGTGAGAAGCATTTATGTCAAGAGTGTGGGAAGCACTTTGCGCAACGGAGCACTTTGCTCAGGCATGCCAGAAATTCAATAAAAATGGAAGGAAGCTCAAAAACGGCAGAACTTTATTGTTTGGGATGTCTCTGTAGTCCTACAGACTCCAAAATACAGGACTATAAAATACAGTATGCACATTTCTGGGCAATATTTGAGGTCAACTCAATAAGGTTATGCTATCTATGCAAGAGGATGGCCCAATATGCCGAGATATTCATACAAAATGTACAAAGCAATCAGATATTACTACAAAACTGTCTTGGGGACCTTGCTACTACAATGGAAGAAGCTCGCTGTCAACTGCAGCCCTTAATAACACTCTCTCACTCTCCTTTAGACCCAATTACACTATCTGAAAAAGATGATATAGACTTTAAAGCTAGTGGCAAAGAGTCCCAACTAACTGTAACTGTTATATGTAATAAGGTTCAAAATAATACAAGTAAAAGAGACAGCATGTATGACATTGATATGAGAAGTGAAGAAGAAACCATAGAAATGCAtaagaaaaatatcaaaatagaaTTGAAAGTTGAAGAAGCACTGGATCATCTGGACAAAGAATTTGATGATGACAATgatgATTTCCAAGACCCTTACATTAAGGAAGAAGACGATTTCCCCTTGCATTTATTGAAAAAGGAAATACAAATAGAAGCCGTTCAAGTTAAAGGCTTAAAGCCACTCGGGAAGAAGGATAGAATTAAAAGGGAAAggaaaaaagttaagaaaatgATTAGAAAGACTAAAGAGCTACAGAATAATGAGGAACTAGGAATAAGGAAAATTTTAATAACCAAAGAAGAATGCATGGAAGAGAGGAAGCTGCAAGCGCAAGACCAGGTTTACTTGAATTGTGCCTACAAGTGTGAAAACTGCTTAAAAGGGTTCAACTATAAAGCGGCTTATGATAACCATTTGAAACGACACAGTGAGgaaATGGGTGCGTTCAAATGTGAAATTTGTAAACTCAGAATGGACTCACAAGACAAATTACTTAGCCATAAAAAATGCCATACAATACGTTTCCAATGCACAGAGTGCGGGATAATCCGCACCAGCCGATCCACTCTACTGGATCACCACAATGCGATCCACAAACAAGGGGAGAACCAGTTCGCTTGCCCTTACTGTCCTAAGACtttcaaACGTCAGATGTCCCAAAGAAAGCACATAAGATACACTCACCAGAACAAAGAACGAGTTACATGTGCCTATTGTCAGAAAAGTTACGCGAACAAAGAAGTAATAAAGTCTCATATGATGGCACAGCATCCAAAAGAAGTAGCAGCAATAGAGCCAGCGAAGAAATATCCTTGTGAAGAATGCGGGATGCTGTTCCGGTCACCAACTCATCTCAGAATGCATAGCTACAAACATTCACTTAGCCGGGATTATTACTGCGTGGAGTGTGACAAaGCATTCAAATCGGAGGCAGTATTGAAGCAACATTTGAAAACTGCACAACCTCATATAAACTATTCAGACTTGCCATTGTGTTGCGAGCAGTGCGACAAAAGATTTGCGATAAGAAGAGATCTGGATCGACATATGAATAGCGTACATTTGGAGGTCAAACCGTTTAAATGCGACAAATGTGACAAGgcgtATGTAAGCAACTGGTCGCTTAGAGATCACAAAAGACACGTTCATGAAGGATTTAAACGACCCCTGCGGTACCCCTGCAAGTTCTGTGACAAGATATTTGACCGCAGTTCGATCCTCAAAGCGCATATTCGCACGCACACAGGCGAGCGCCCATACCAGTGTGACAAATGTCCCGCACAATTTAGCCAATCAGGAGTCTTGGCGACTCACAACAAACTAATACATCAGCGACTAACGCGCGACGGGAAACCCAAACAAAACTCAGCGATTAAAGATACTTAA
- Protein Sequence
- MDLDIDSMDKTVHHESKPIKNIIRGEGKIFNELSKDDDETVNWKSVIPVEGKRKKKIHDKKALIYKKANSTYKKLKIRKELERRTFISVYTIVRHARTHSDYNLSCSYGCGYSTVYRGALSDHEKRHEKNYRYKCSTCGAGFHVKTWHDQHQNIHNNIKPYICDVCGMAFHMDRYLTSHRTTAHPSELSKGVKRFLCPHCDQAFETTRNFRTHLEEHRGKKKFLCALCGKECATGEQLKRHNNSHLGIKPFACSICNKKFAKKFNLSVHQRAHAGEKHLCQECGKHFAQRSTLLRHARNSIKMEGSSKTAELYCLGCLCSPTDSKIQDYKIQYAHFWAIFEVNSIRLCYLCKRMAQYAEIFIQNVQSNQILLQNCLGDLATTMEEARCQLQPLITLSHSPLDPITLSEKDDIDFKASGKESQLTVTVICNKVQNNTSKRDSMYDIDMRSEEETIEMHKKNIKIELKVEEALDHLDKEFDDDNDDFQDPYIKEEDDFPLHLLKKEIQIEAVQVKGLKPLGKKDRIKRERKKVKKMIRKTKELQNNEELGIRKILITKEECMEERKLQAQDQVYLNCAYKCENCLKGFNYKAAYDNHLKRHSEEMGAFKCEICKLRMDSQDKLLSHKKCHTIRFQCTECGIIRTSRSTLLDHHNAIHKQGENQFACPYCPKTFKRQMSQRKHIRYTHQNKERVTCAYCQKSYANKEVIKSHMMAQHPKEVAAIEPAKKYPCEECGMLFRSPTHLRMHSYKHSLSRDYYCVECDKAFKSEAVLKQHLKTAQPHINYSDLPLCCEQCDKRFAIRRDLDRHMNSVHLEVKPFKCDKCDKAYVSNWSLRDHKRHVHEGFKRPLRYPCKFCDKIFDRSSILKAHIRTHTGERPYQCDKCPAQFSQSGVLATHNKLIHQRLTRDGKPKQNSAIKDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00143238;
- 90% Identity
- -
- 80% Identity
- -