Ahis014110.1
Basic Information
- Insect
- Apocheima hispidaria
- Gene Symbol
- Zfa
- Assembly
- GCA_947579745.1
- Location
- OX388168.1:8556213-8577907[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.039 2.4 9.0 0.3 2 23 38 60 37 60 0.94 2 18 6.8 4.3e+02 1.9 1.2 1 21 66 86 66 88 0.71 3 18 0.003 0.19 12.5 1.2 1 23 94 117 94 117 0.96 4 18 3.8e-05 0.0024 18.4 1.4 1 23 127 149 127 149 0.98 5 18 0.016 1 10.2 2.2 1 23 155 177 155 177 0.94 6 18 9.3e-06 0.00058 20.4 0.6 1 23 183 205 183 205 0.97 7 18 0.00015 0.0091 16.6 1.8 3 21 212 230 210 231 0.92 8 18 0.00089 0.056 14.1 1.0 1 23 488 510 488 510 0.99 9 18 4.8 3e+02 2.4 3.4 1 21 517 537 517 539 0.93 10 18 0.0026 0.16 12.7 0.5 1 23 543 566 543 566 0.94 11 18 5.7e-06 0.00036 21.0 2.0 1 23 573 596 573 596 0.96 12 18 0.0065 0.41 11.4 0.7 2 23 603 625 602 625 0.94 13 18 0.0003 0.019 15.6 0.8 1 23 638 660 638 660 0.95 14 18 8.2e-05 0.0051 17.4 0.2 1 22 666 687 666 691 0.94 15 18 0.00048 0.03 15.0 1.5 2 23 700 722 699 722 0.95 16 18 6.6e-05 0.0041 17.7 1.9 1 23 728 751 728 751 0.97 17 18 2e-05 0.0012 19.3 0.6 1 23 760 782 760 782 0.99 18 18 0.0045 0.28 11.9 0.1 1 23 788 811 788 811 0.94
Sequence Information
- Coding Sequence
- ATGAAGTTAAACAAGAAGTTAGAAAAATCAGAAAGACCCTTTAACTGTCGTACTTTCACTAGTGTTTACGCTATCGTCCGTCACGCTCGCGCTCACAGTGATTATAGTCTGTCCTGCTCGCACGGCTGCGGCTACAGCACCGTGTACCGAGGGGCGCTCGCAGACCACGAGAAACGACATGAGAACACTTTTAAGTATAAGTGCGCGACTTGCGGCGCTGGGTTCCACGCCAGGACTTGGCACGACCAGCACCAGAATATACACAAGAATGTCAAGCCTTTCGTGTGTGATTTGTGTGGAATGGCCTTTCACATGAACAGGTACCTTACGTCCCACCGTTCGTCGGTTCACGCGGAAACTATTAAAGGAGTTGAACGGTTCGTGTGTCCGCAGTGTGACCTCGCCTTTAATAACGCGCGACATTTCAGGACGCACTTAGAGAAGCACAGAGGCAAGAAGAAGTTTCTATGCGCCCTCTGTGGGAAAGAGTGCACATCTACTGAACAGTTAAAGTACCATAACAACTCACATTTGGGACTCAAGCCGTATTCCTGCAGTATATGCAATAAAGGATTTGCCAAGAAGTTCAACCTGACGGTGCACGAGCGAGCGCACGCGGGGGAGAAGCATTTATGCCAACAATGCGGCAAGCATTTCGCACAACGCAGTACTCTACTGAGGCATGCCAGGAGTCCTATTGACTATAAAATACAGGATTATAAAATCCAATACGCTCATTTCTGGGCTATATTTGAGGTGAGCACAATAAAGCTATGCTATCTATGCAAGAGGATAGCTCAACATGCGGAAATATTCATTCAAAATGTACAAAGTAATCAAATATTACTACAAAACTGTCTTGGGGACCTAGCAACTACCTTAGAAGAAGCCCGCTCACAACTCCAGCCTTCAATGACCGTCGCTCGTTCACCATTAGACTCTATGACAATAACCGAAAAAGACAATGCAGACTTTACAACCACCGGCAAAGAGTCCAGAATCATAGAAACGGTTACCTGCAAGAAGTCGAAAAATGTCGAAGATAGAAGCGGCTTGGACGAAGTTCATTTGAGAAATGAAGAGGATGAAATAATAGAGATGCATAAGAAGAACATAAAAATAGAATTAAAGGTAGAAGAGGCATTGGGAAATTCAGATGGAGGATTTGATGACGAAAATGATGACTTCCAAGACCCGTATGTTAAAGAAGAGGATGACTTCCCGCTGCATTTATTAAAGAAGGAAATACAAATAGAAGCTATTCAAGTCAAAGGTTTAAAACGACTCGGGAAGAAAAATAGAATTAAAAGAGAAAGGAAAAAAGTCGAAAGGATAATAAGAAAGACTAAGGAGATACAACATAATGAGGCACTAGGAATAAAGAAGATATTAATAACCAAAGAAGAATGCATGGAAGAGAGAAAGCAACAAGCGTTAGACCAGGTTTACTTGAATTGTGCTTACAAATGCGAGGATTGTCTCAAAGGGTTTAACTTTAAAGCTGCCTATGATAATCATTTGAAAAGACATAGTGAGGAAATGGGTGCGTTCAAGTGCGAAGTTTGTAAACTCAGGATGGACTCCCAGGACAAGTTATTAAGCCATAAGAAATGCCATACAGTACGTTTTCAATGCACAGAATGCGGAATCATCCGCACCAGTAGATCAACTTTACTGGATCATCACAACGCGATCCACAAGCAAGGAGAAAGCCAGTTCGCCTGCCCTTACTGCCCCAAGACTTTTAAACGACAAATGTCCCAGAGAAAGCACATCAGATACACCCATCAGAAGAAAGAGCGAGTCACTTGTAAGTTCTGTCAGAAGAGTTACGCGAACAAAGAAGTTATCAAATCTCATATGATGGCAAAGCATCCAAAAGAAGTGGCTGCAATAGAACCAGCGAAAAAGTATCCTTGCGAAGAATGTGGTATGCTGTTCCGGTCACCCACCCATCTCAGGATGCACGGCTACAAGCACTCCCTCAGCCGGGATTATTACTGCGTCGAGTGCGACAAGGCTTTCAAATCGGAGGCGGTACTGAAGCAGCATCTGAGGACAGCACAACCCCACATCAACTACTCGGACCTCCCTTTGTGTTGCGAGCAATGCGATAAGAGATTCGCGATAAGGAGAGATCTGGACCGACACATGAACAGCGTCCATCTCGAGGTCAAGCCCTTTAAATGTGATAAATGCGACAAGGCGTACGTTAGCAACTGGTCCCTCACAGATCACAAGAGACACGTCCACGAGGGATACAAGCGTCCCTTGCGGTACCCCTGCAAGTTCTGTGAGAAGATATTCGATCGCAGTTCAATCCTTAAAGCTCACATCCGCACTCACACAGGCGAACGTCCGTATCAGTGTGACAAGTGTCCCGCGCAGTTCAGCCAATCAGGCGTCCTGGCGACACACAACAAACTCATACACCAACGGTTGACGCGCGATGGAAAACCTAAACAAAACGCTGGAATTAAAGATACATAA
- Protein Sequence
- MKLNKKLEKSERPFNCRTFTSVYAIVRHARAHSDYSLSCSHGCGYSTVYRGALADHEKRHENTFKYKCATCGAGFHARTWHDQHQNIHKNVKPFVCDLCGMAFHMNRYLTSHRSSVHAETIKGVERFVCPQCDLAFNNARHFRTHLEKHRGKKKFLCALCGKECTSTEQLKYHNNSHLGLKPYSCSICNKGFAKKFNLTVHERAHAGEKHLCQQCGKHFAQRSTLLRHARSPIDYKIQDYKIQYAHFWAIFEVSTIKLCYLCKRIAQHAEIFIQNVQSNQILLQNCLGDLATTLEEARSQLQPSMTVARSPLDSMTITEKDNADFTTTGKESRIIETVTCKKSKNVEDRSGLDEVHLRNEEDEIIEMHKKNIKIELKVEEALGNSDGGFDDENDDFQDPYVKEEDDFPLHLLKKEIQIEAIQVKGLKRLGKKNRIKRERKKVERIIRKTKEIQHNEALGIKKILITKEECMEERKQQALDQVYLNCAYKCEDCLKGFNFKAAYDNHLKRHSEEMGAFKCEVCKLRMDSQDKLLSHKKCHTVRFQCTECGIIRTSRSTLLDHHNAIHKQGESQFACPYCPKTFKRQMSQRKHIRYTHQKKERVTCKFCQKSYANKEVIKSHMMAKHPKEVAAIEPAKKYPCEECGMLFRSPTHLRMHGYKHSLSRDYYCVECDKAFKSEAVLKQHLRTAQPHINYSDLPLCCEQCDKRFAIRRDLDRHMNSVHLEVKPFKCDKCDKAYVSNWSLTDHKRHVHEGYKRPLRYPCKFCEKIFDRSSILKAHIRTHTGERPYQCDKCPAQFSQSGVLATHNKLIHQRLTRDGKPKQNAGIKDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00207187;
- 90% Identity
- -
- 80% Identity
- -