Bbet023198.1
Basic Information
- Insect
- Biston betularia
- Gene Symbol
- -
- Assembly
- GCA_905404145.1
- Location
- FR989890.1:4146641-4149582[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.021 1.6 9.9 0.2 1 23 158 181 158 181 0.94 2 16 4.2 3.4e+02 2.6 0.4 3 23 209 229 207 229 0.90 3 16 0.0091 0.73 11.0 1.4 3 23 252 272 250 272 0.94 4 16 0.0029 0.23 12.6 0.0 1 20 276 295 276 296 0.95 5 16 0.0076 0.61 11.3 0.5 2 23 306 328 305 328 0.91 6 16 0.0054 0.43 11.7 4.7 1 23 336 359 336 359 0.96 7 16 0.00035 0.028 15.5 0.7 1 23 365 388 365 388 0.97 8 16 0.0086 0.68 11.1 5.1 2 23 396 417 395 417 0.98 9 16 0.0078 0.62 11.2 2.9 1 23 423 445 423 445 0.98 10 16 0.0036 0.28 12.3 3.1 2 23 452 474 451 474 0.96 11 16 0.0076 0.61 11.3 1.1 2 23 481 502 480 502 0.93 12 16 0.071 5.7 8.2 0.1 1 23 508 530 508 530 0.97 13 16 0.0087 0.69 11.1 0.6 1 23 540 563 540 563 0.95 14 16 2.1e-05 0.0017 19.3 1.9 1 23 569 591 569 591 0.96 15 16 0.00011 0.009 17.0 2.2 1 23 597 619 597 619 0.97 16 16 9.9e-05 0.0079 17.2 1.1 2 23 626 648 625 648 0.96
Sequence Information
- Coding Sequence
- ATGCGTACAGTTGACGGTCGCGACACAACTTCAAGTCTGTCGGTAAAAACAGCGCAGGCGGGACAGCTGATGGAACCGGTTCTACTTTACCGACAGAGGAGTGTCGGAAACATCATCAAAGTTAAAACTGAAGACATACCGTGGGAAATAACTGTTACAAAAATAAAACCAGTGGAAGGTGATGATAATAACAAGATAGAGAAAGAAAATAATGATGTGAAACACGAAATGGTCGATGGAAACTGCAAAAAGATACACGATGTTGTCATAAACAGAATAGGAAATAAATATATATCTAGATCTGAACCAGAAGTTGTAGACTTGTTGAAGAAACATAAGATTTATTGCAAAAAACCAACGGAACCGGAAATAGATCATGAAACAGAGTTAAAGAAACATCGCCATAATATCAGAACGATTATGAAGAATTCGAACGCAACTCCGTTCCGAGCCTTCCACGTAGACGATGGCTTTGTTTGCTCTTTCTGTGAAAGCGTCTTCAAAATCGCTGCTGAATTAAAAACTCACACTAACGACATACACGTCGATGATAAAGACAAATTTAAAGAGAAATCTACTTCCGTCTTCAGGTATGTGGTAAAGCTAGACGTCACAGGGTTAAACTGTAAAATTTGTTGCATTGATATAAAAACTATAGAAGATTTGGTGATACATTTGCAAACACACGACTTAAAACTATATGATATAAACAATCAAATAGTGTCTTTCAAATTTGATTCGGATGCTATATGCTGTGTGTACTGTGGCAACGAGTTTAGTAATTTCAAATTCTTATTAGACCATATGAACGAGCATTATAAGAACTATGTTTGTGAAGATTGCAACGCCAGTTTCATAAACTATAGGATGTTGCTAGCGCACACAGACGGAGAAGACCTCACTGTCGGTGAAGTCAAATGTCAGTTATGTGATGAAGTGTTCGAAAAGTACTCAAAATACAAACAACACGAGTCACTGGCTCATACAGGTTTTAATCTCACCTCGCACAATTGCACACACTGCAAAGAAGAGTTCAAATCGGATGACAGTTTGAGAGAACACGTGAACAAAAAACACAAAGGATGCCATGAATACAAATGTGAAAATTGCAATAAAACGTACGACTCCAAAGTTTTCCTAATAGGACATGTTAAAAGAGTCCATTTACAAGAAGATAAACATGTCAAATGTCACGTGTGCGCTAGGAGCTTCTATACGAGGCAGCAGCTGCAGTGTCACATGCTGACACACACTGACACGAGACAGTTCCAATGTGACATCTGTGCGCTAAAGTTTAAATGCAAGGAGACTTTGGAGCGACACATATTCACGCACAACTTGAAAGGCAAAAACAAATGCCTGTTCTGCGAGGAGTCCTTCATAAGACTGTCACATTTAGATCACCACGTACGCCAGGATCATCTGAATGACAATAAGACGAGATGCTCTATTTGCGATAGGACCCTTTATCAATCGCAGATGAAGAAACACATGGCGTTGCGACATTCCGATATGCGAACGTTTACTTGTTCGGTTTGCGCGTTGGTGTGCGAGTCGAAACTTGCTTTGGTGATACATATGGGTTCGCATCCGAATTTGAAGCCTGAGAGTAAGAGACATGAATGTCTCGCTTGCGGGAAGATGTTCGATAAAGCAATGTATGTTACGAGACACGTTCAAAGAGTCCACTTACTGGAGAGGAGGTTTGTCTGCGATCACTGCGGAAAACAGTTCGCTGACTGCACCGCCTTGAAGAACCACCTAGCTTTACACGGAACAGGGCCGTCGTTTCCATGTTTTGGTTGCACGAGGGTGTTTAAAACAAAGAAGAGTATGAAAAATCACGCTCGTAATCATTTGGAAGAGAAGAAAGTGAGATGCGAGATTTGTCACCACGCTTTCATATACCCGTATTTATTGAGAGAGCATATGAAACAAGCGCATAGACTCTGA
- Protein Sequence
- MRTVDGRDTTSSLSVKTAQAGQLMEPVLLYRQRSVGNIIKVKTEDIPWEITVTKIKPVEGDDNNKIEKENNDVKHEMVDGNCKKIHDVVINRIGNKYISRSEPEVVDLLKKHKIYCKKPTEPEIDHETELKKHRHNIRTIMKNSNATPFRAFHVDDGFVCSFCESVFKIAAELKTHTNDIHVDDKDKFKEKSTSVFRYVVKLDVTGLNCKICCIDIKTIEDLVIHLQTHDLKLYDINNQIVSFKFDSDAICCVYCGNEFSNFKFLLDHMNEHYKNYVCEDCNASFINYRMLLAHTDGEDLTVGEVKCQLCDEVFEKYSKYKQHESLAHTGFNLTSHNCTHCKEEFKSDDSLREHVNKKHKGCHEYKCENCNKTYDSKVFLIGHVKRVHLQEDKHVKCHVCARSFYTRQQLQCHMLTHTDTRQFQCDICALKFKCKETLERHIFTHNLKGKNKCLFCEESFIRLSHLDHHVRQDHLNDNKTRCSICDRTLYQSQMKKHMALRHSDMRTFTCSVCALVCESKLALVIHMGSHPNLKPESKRHECLACGKMFDKAMYVTRHVQRVHLLERRFVCDHCGKQFADCTALKNHLALHGTGPSFPCFGCTRVFKTKKSMKNHARNHLEEKKVRCEICHHAFIYPYLLREHMKQAHRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00207205;
- 90% Identity
- iTF_00207205;
- 80% Identity
- -