Basic Information

Insect: Biston betularia
Gene Symbol: -
Assembly: GCA_905404145.1
Location: FR989892.1:301853-305037[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3e-07 2.4e-05 25.1 1.1 2 23 116 138 115 138 0.95

2 14 0.0029 0.23 12.6 0.5 2 23 145 167 144 167 0.95

3 14 0.0034 0.27 12.3 2.8 2 23 174 196 173 196 0.93

4 14 5.2e-07 4.1e-05 24.4 0.6 2 23 204 226 203 226 0.96

5 14 5.9e-05 0.0047 17.9 1.2 1 23 232 255 232 255 0.95

6 14 0.00031 0.025 15.6 0.4 1 23 262 285 262 285 0.97

7 14 1.5e-06 0.00012 22.9 2.7 2 23 291 313 291 313 0.96

8 14 0.00033 0.026 15.6 3.5 1 23 329 352 329 352 0.96

9 14 0.0048 0.38 11.9 0.5 5 23 365 384 362 384 0.92

10 14 4.8e-05 0.0038 18.2 0.6 2 23 390 412 390 412 0.97

11 14 0.25 20 6.5 5.2 2 23 420 442 419 442 0.91

12 14 1e-06 8.2e-05 23.4 1.6 1 23 447 469 447 469 0.98

13 14 0.032 2.6 9.3 2.7 1 23 475 498 475 499 0.95

14 14 4.5 3.6e+02 2.5 0.1 2 20 609 626 608 628 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3e-07	2.4e-05	25.1	1.1	2	23	116	138	115	138	0.95
2	14	0.0029	0.23	12.6	0.5	2	23	145	167	144	167	0.95
3	14	0.0034	0.27	12.3	2.8	2	23	174	196	173	196	0.93
4	14	5.2e-07	4.1e-05	24.4	0.6	2	23	204	226	203	226	0.96
5	14	5.9e-05	0.0047	17.9	1.2	1	23	232	255	232	255	0.95
6	14	0.00031	0.025	15.6	0.4	1	23	262	285	262	285	0.97
7	14	1.5e-06	0.00012	22.9	2.7	2	23	291	313	291	313	0.96
8	14	0.00033	0.026	15.6	3.5	1	23	329	352	329	352	0.96
9	14	0.0048	0.38	11.9	0.5	5	23	365	384	362	384	0.92
10	14	4.8e-05	0.0038	18.2	0.6	2	23	390	412	390	412	0.97
11	14	0.25	20	6.5	5.2	2	23	420	442	419	442	0.91
12	14	1e-06	8.2e-05	23.4	1.6	1	23	447	469	447	469	0.98
13	14	0.032	2.6	9.3	2.7	1	23	475	498	475	499	0.95
14	14	4.5	3.6e+02	2.5	0.1	2	20	609	626	608	628	0.85

Sequence Information

Coding Sequence: ATGGAAGCGGTTTATATCAAAAGTGAAATTATAGATATTGAAATTAAGGAGGAGCCTGTAGACAGTGAAGATGGTGAAGCAGATAATAGTACTCCGACAACCTCTTGCAAGAAAGAATTGAACATAGGAGAGAAATCAGAACAATTGTGTACACAAAACTCTAGTATTTCAATCGATAAATTATGTCGTGCACAAATATTACAACAAAACGAAACACTAACATATTTGAATCAAAATGAAAACACAGAAGCGAACACAGAACTATCGCAGCAAAATGGAGAAGCACCGTCATCACATATAGACATTCAAGGAAAAGTATACGAGAATGGAAAAATAAATAGATTGAACTGTTCTCAGTGCGGGAAGTCATTTAAGAATAGAGCGAATTTGAAAAATCATATAAAATACGTACACTCTGAAGACCAAACCATTGAATGCACAGAATGCATGAGAAGTTTTAAATCATTGCTGTACTTGCGGTCACATATGAGCTCCGTGCACGCGAAGACTGAGTTGGTACAGTGTGAACACTGCCAGAAAGTATTTCTGAACAAGAAAAAGCTGAACAACCATATATATTATACGCACAGGCAGCCGGAGGAACAAGTCACATGTAAAATATGTTCAAAGACATTTAAAGGGCCATATAATTTGAAAATTCATATGAGGTATGTACATCCCCAAGGAGACCCGCATCCATGCCCGTTCTGCTATAAAACGTTCAAAGTTGAAATGCTGCTACAAAGGCACATGAAATGGGCCCACCCAGACGATGGCATGACCTACAAATGCCAGGAATGCAATAAAATCCTACCGTCCCTTGACGGTTACAAAACCCACATGAAAAATGTACACCTATTCGACAGAGCTACATGTGACATATGCAAGCGAACATTCAAAACTAAGAAATCTTTAGAACGGCACATGAAAAACATACACAATGGGAAAAAAAACACAGAAGTCACAACGTACGTCCCTAAAGAACACACATGCCAATACTGTGAACGCACCTTCAACAATACAACCTCACTATTTTGGCATATAGAAAGATTTCATGCACAACTACAGAAACTACCTAATAATTTGTGTATTATATGCAATAAAGAGTTTTCGGATTACGCTGCGTTGCATAGACATCTGACTTCGGTGCATTCGCTGGAAACTGCCACTTGTAAGATATGCATGAAAGAGTTCAAATCACCGATCAACCTTCAAAATCATATAAGGATAACTCATGCCCCACCGGAAGCGATACAAAAGTGTGAAACTTGCCATAAGACATTTAAGTGTCCGTTGCATTTGAGAATGCATGTCTTAGCTGTGCACGACGGGGGTCAATACCCTTGTGACATCTGTCAGAAAACTTTCACGTCAATGAAATATTTGAACAAACACATAAAGTCCCATAACAAAGCTAGAGACTTCCAATGCGACGTCTGCTTGAAAATGTACAAAAACATAAATTCCGTTAACAAACACAAAAAGCAAGTGCATCATGGAGTCAAATGCAATATTTGTAACATAAAACAGGCAAATATAGAAGAGCATTTGAGGAAATGTCACCCGGACGTTGCTTTGAATTTAACTATGGACTCTGTGAAAAGTACGAATCAGGATATGGACTCTACACATTTATCGAATGTGACTATGTCCTCTGTGAATCATGTGGACTTGGAGAAATCTTCAAATGTTGCTAATGTAACAGTGAAATGTGAAAATGAAAGTATGGACACAGTGAAATATGAGAATGAAAGTATGGACACAATGAAATATGTGAATGAAAGTATGGACGCAATGAAAACTGAAATAAAAATAGACGAAATAACATGTAGAGTATGCAATAAGATAATAGATAGTTCAGAATACAATGAACACGCCAAGAATTGCGAACGCCCGCCTATTGTTGAAGTGACTATTAAAATGGAAGTAGAAGATACATAA
Protein Sequence: MEAVYIKSEIIDIEIKEEPVDSEDGEADNSTPTTSCKKELNIGEKSEQLCTQNSSISIDKLCRAQILQQNETLTYLNQNENTEANTELSQQNGEAPSSHIDIQGKVYENGKINRLNCSQCGKSFKNRANLKNHIKYVHSEDQTIECTECMRSFKSLLYLRSHMSSVHAKTELVQCEHCQKVFLNKKKLNNHIYYTHRQPEEQVTCKICSKTFKGPYNLKIHMRYVHPQGDPHPCPFCYKTFKVEMLLQRHMKWAHPDDGMTYKCQECNKILPSLDGYKTHMKNVHLFDRATCDICKRTFKTKKSLERHMKNIHNGKKNTEVTTYVPKEHTCQYCERTFNNTTSLFWHIERFHAQLQKLPNNLCIICNKEFSDYAALHRHLTSVHSLETATCKICMKEFKSPINLQNHIRITHAPPEAIQKCETCHKTFKCPLHLRMHVLAVHDGGQYPCDICQKTFTSMKYLNKHIKSHNKARDFQCDVCLKMYKNINSVNKHKKQVHHGVKCNICNIKQANIEEHLRKCHPDVALNLTMDSVKSTNQDMDSTHLSNVTMSSVNHVDLEKSSNVANVTVKCENESMDTVKYENESMDTMKYVNESMDAMKTEIKIDEITCRVCNKIIDSSEYNEHAKNCERPPIVEVTIKMEVEDT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00207190;
90% Identity: -
80% Identity: -