Basic Information

Gene Symbol
nfxl1
Assembly
GCA_947172395.1
Location
OX359206.1:10869069-10871546[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 1 2e+04 -7.8 5.6 15 19 135 139 134 139 0.81
2 18 0.0052 1.1e+02 3.2 0.3 4 10 170 176 169 177 0.97
3 18 1.6e-07 0.0031 17.6 15.9 3 19 187 203 186 203 0.95
4 18 1 2e+04 -5.0 2.1 6 10 228 232 227 232 0.81
5 18 1.1e-06 0.022 15.0 12.8 3 18 240 255 238 256 0.91
6 18 2.2e-09 4.4e-05 23.6 13.7 1 19 291 309 291 309 0.99
7 18 3.3e-06 0.066 13.4 17.9 3 18 346 361 338 362 0.86
8 18 3.3e-05 0.68 10.2 20.3 1 18 396 413 396 414 0.97
9 18 7.2e-09 0.00015 21.9 17.3 1 19 423 441 423 441 0.99
10 18 0.98 2e+04 -4.1 1.6 6 10 470 474 469 475 0.54
11 18 3.7e-05 0.74 10.1 6.1 9 19 489 499 487 499 0.90
12 18 0.00061 12 6.2 5.1 1 12 508 518 508 518 0.96
13 18 0.019 3.8e+02 1.4 1.7 13 18 546 551 545 552 0.85
14 18 0.17 3.5e+03 -1.7 0.2 8 12 568 572 568 573 0.83
15 18 7.1e-06 0.14 12.4 3.6 1 12 588 599 588 601 0.92
16 18 0.78 1.6e+04 -3.8 1.7 15 18 613 616 613 617 0.87
17 18 4.9e-05 0.99 9.7 15.0 3 18 629 645 628 646 0.84
18 18 1.6e-07 0.0032 17.6 12.2 1 16 687 701 687 707 0.92

Sequence Information

Coding Sequence
ATGGCTCGAAGATACCGCGATGCCGCTGCCAAATTACAGGAAAACGTGCAAAAACATTTAAAAACTATCAAGCATGAGGTGTCTTCTTCGGAAGACGACGAACCTTTTGAACAGAATGTCTTGGATGGAGTGCTTCAGAGCTACTGTAGGGGTGGTGGAGACACCCAAATGCTGGAAAGAACCAAGAATCTCCTCGAAGAAGCTATAAGTGGTAGGTCTATAACTTGCTTAATATGTATTGGTTCTATAAAGCGAGCGGATGCGATATGGACTTGTGAACACTGCTACTCTTATTTTCATCTATCATGTATTCAAAAGTGGTCAAATGACAGCATTAGCTTACGAAACGAAGAACATCATGGCCCGATTGCCGTGTTCCGACCTATGAAAATTGAATGGTGTTGCCCAAAATGCCGCCATTCCTATGGTAAAGAAGAAATTCCCAGAAAATACCGCTGTTTTTGCAACAAAACTGACGATCCTGTCTATCATCCTTGGTTAGTTCCTCACACTTGCGGAGAAGTTTGTGGAAAAAGGTTGTCTTTGGGAGAAAATTGTAAACACAAGTGCCTGCTACTGTGCCATCCGGGTCCTTGTCCCCCGTGTCCACAGACAGTGAACAGAGCATGCTATTGTGGCAAATCTAATAAGAGAGTCAGGTGTAGCGCAGCTCACTGGTCCTGTCAACAACAATGTAACAAGATACTGCCCTGCAAGTCACACAACTGTGAAATAGAATGCCACGATGGAAATTGTCCACCCTGCAACTATACAAGCTTGCAACCATGTCAGTGTGGAGCTGAGAAAACAAAGCGCGCCTGCAATGATCTCATATGGCAGTGCGCAAAGCAATGTAATAAACCATTTGCATGTGGTTATCACAAATGTGAGAAATTGTGTCACACTGGCACTTGTGGAACATGCCCTCACTCTGGTATTCGGTCTTGCCCATGTGGCTCCATTGAGCGCTTCATACAGTGCCCTGATGTTATTGAAACATGTGTCAGTACATGTGGTAAGAAACATGAAGATTGTGAACATAATTGTCCAGCAAAATGTCATAAAGGACAGTGTCCTCCATGCTATGTTTTGATAGAAAAAAAATGTCAATGTTTAACACACACTCGCTCACTTCCATGCAGCAAAGAGTTCAGGTGTGAAACAAAATGCAGAGGCACAAGACCATGTGGAAAGCATGGTTGTGGTCGCAAATGTTGCAATGGTAACTGTCCGCCTTGTGAAAAGATTTGTGACAAACCTCTTCAATGTGGTCGACACAAATGCACCACAGTTTGCCATCATGGGCCTTGCTATCCTTGCCCTTTGGAATCTAAAGTAACTTGTAGATGTAAAGAAACATATATAACAGTCCCATGTGGTAGAGAAAGACACACACGGCCACCTAAATGCAGTCATCCATGTAAGATAAAATACAAATGTGGACATATAAATGAAAATAAACATACTTGTCACTTTGGTGACTGTCCACCATGCAAGGCAATTTGTAACAAAACACATGAGTGTGGGCACAACTGTGTAGCCATTTGTCATGAATATGTGTCAGTAGTGTTCAAACAGGTGGAAAAACCGGCTACGCCATGGGAAATTCAGCCTTCCAAAACTAAGATTGTCAAACAAGATTGCCCACCCTGTGTCGCCCCTGTTTTGGTGACATGTTTTGGAGAACATGAGACAGATTACCAGCCATGTCATAAAGCTACTCGTAGACCATGTGGCCGAGAATGTGGCAGACCACTTGCATGTGGAAACCACTTATGTGAACTTCTCTGTCATTTGCAGGAAAATAATGTTTCTTATCCAAATGTGCCTTATATTTGCAAACCATGCAATAGAGAATGTTCAATAGTCCGTCCAGAGAAATGCATGCACAAATGCGCTAAACGAGGCTGTCATCCAGGACCATGTCCACCGTGTGATATACTGGAAAGAATTCCTTGCCATTGCAAGGTGACAGAAATGTATTTTCGTTGCAGAGAGCTTGCAACTTCAACTGAAGAAATGTTCAGTTGTAAACAGCAATGTCCAAAGAATTTAGACTGTGGTCATCGCTGTAAGAAACTATGTCACTCTGGACCATGTAAAGACAACCAAATATGCCATAAAAAGACAAAAATTAACTGTCCCTGTGGTAATTTGAAAAAAGAAGCACAATGCACTGCTGTTAGGAACTCGGAAATACAAATTAAGTGTGATGAAAGTTGTGAAGCTAAAAAAGCTGCTGCTAAATTGGAAAGGGAAAAAGAAGAAAAAAGATTAAAAGAATTGGAAATAGAGAAAAACCGCAGAGAATTAGAGGAATATGAATGGAAATTGAGTGGCAAGAAAAAGAAATATAAAGAGAAGAAAATAGTTCTTAACAAGGATGACAGAAGTTGGCTACAAAGATATTGGGTTCCTATTTTATCTGTAGCTGTAGTGATTGTAGCTGCTATTTATTATATATTAATAATTAGTTAA
Protein Sequence
MARRYRDAAAKLQENVQKHLKTIKHEVSSSEDDEPFEQNVLDGVLQSYCRGGGDTQMLERTKNLLEEAISGRSITCLICIGSIKRADAIWTCEHCYSYFHLSCIQKWSNDSISLRNEEHHGPIAVFRPMKIEWCCPKCRHSYGKEEIPRKYRCFCNKTDDPVYHPWLVPHTCGEVCGKRLSLGENCKHKCLLLCHPGPCPPCPQTVNRACYCGKSNKRVRCSAAHWSCQQQCNKILPCKSHNCEIECHDGNCPPCNYTSLQPCQCGAEKTKRACNDLIWQCAKQCNKPFACGYHKCEKLCHTGTCGTCPHSGIRSCPCGSIERFIQCPDVIETCVSTCGKKHEDCEHNCPAKCHKGQCPPCYVLIEKKCQCLTHTRSLPCSKEFRCETKCRGTRPCGKHGCGRKCCNGNCPPCEKICDKPLQCGRHKCTTVCHHGPCYPCPLESKVTCRCKETYITVPCGRERHTRPPKCSHPCKIKYKCGHINENKHTCHFGDCPPCKAICNKTHECGHNCVAICHEYVSVVFKQVEKPATPWEIQPSKTKIVKQDCPPCVAPVLVTCFGEHETDYQPCHKATRRPCGRECGRPLACGNHLCELLCHLQENNVSYPNVPYICKPCNRECSIVRPEKCMHKCAKRGCHPGPCPPCDILERIPCHCKVTEMYFRCRELATSTEEMFSCKQQCPKNLDCGHRCKKLCHSGPCKDNQICHKKTKINCPCGNLKKEAQCTAVRNSEIQIKCDESCEAKKAAAKLEREKEEKRLKELEIEKNRRELEEYEWKLSGKKKKYKEKKIVLNKDDRSWLQRYWVPILSVAVVIVAAIYYILIIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00802512;
90% Identity
iTF_01021906;
80% Identity
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