Bany014503.1
Basic Information
- Insect
- Bicyclus anynana
- Gene Symbol
- -
- Assembly
- GCA_947172395.1
- Location
- OX359231.1:212047-215344[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.097 6.6e+02 0.7 0.1 19 52 127 160 116 161 0.78 2 11 0.0018 12 6.3 0.1 21 48 157 184 148 190 0.85 3 11 0.25 1.7e+03 -0.6 0.1 22 40 186 204 182 220 0.72 4 11 0.34 2.3e+03 -1.0 0.0 21 34 213 226 203 239 0.67 5 11 0.0008 5.4 7.4 0.0 21 41 241 261 233 267 0.79 6 11 7.1e-05 0.48 10.8 0.0 14 45 289 321 284 329 0.79 7 11 0.06 4.1e+02 1.4 0.0 21 36 325 340 321 351 0.77 8 11 0.025 1.7e+02 2.6 0.0 20 44 352 380 339 386 0.65 9 11 0.016 1.1e+02 3.2 0.1 22 43 382 403 375 410 0.85 10 11 0.019 1.3e+02 3.0 0.1 17 48 414 445 404 450 0.78 11 11 0.006 40 4.6 2.4 21 44 502 525 474 530 0.84
Sequence Information
- Coding Sequence
- ATGGATGAACCACAGCAGAATTCTCCAACAGAATACTTGATCATACCCAAGAAGGAACTTCTAGATGTGGAGGTCACTTATGAGAGAGAAAATGGAGAAATAGACGACTTCATCCAACCCAAAGAGGAACCCGATAGCCTAGATAACTCTGAAACTGAACAAGAGTTAGATCCGTTAATTTCTGTTAAAGTAGAGCCATGTGACTCTGAAGTGCATGTCGTAAAGAATGAAGATGAAGTGACGTCGCCTCAAGATGCTGACTTGTGTCACCGAGTGATGATACATAGTGTAAAATCAGAACCTGTCGAAGACATTGAAGCACCTCTCAGCGACCAACCATCTTACCCCTCACCGAGCACCCACCAGTCTGCCCGGACCCCGCACACTCAGAAACCGTTCGCCTGCCTCCACTGCGAGACACACTTCCAATACAAGTACAAACTGGAGCGACACATGAGGATCCACTCTGTTGAGAAGCCCTTCGCCTGTGAGCAGTGTCTGTCTAGCTTCAGACATAAGAACAATTTAACAGAACACATGAAGATACATATAGGAGAGAAACCATTCTTCTGTGACGTTTGTGATGCGAAGTTTATAAGGAAATATGATTTAACGGGTCACATGAGATCTCACACTGGGGAACGGCCATTTGTATGTACGCTATGTGATCATACATTCACTTTGAGACACCATTTAACTGATCATATGAAGGTGCATTCAGGTGAAAAGCCGTTTGTATGTCCTATATGTAAAGCTATGTTTGTAAGAAAGTATGATTTGACAATGCACTCGAGATTTCACTCCGGAGACAAGACATATTCGTGTGAACATTGTTCTAAAACATTTGTTCGAAAAACGACTTATAAAGTACACATGAGAAGCCACACTGGCGAGAAACCGTACACCTGTGATATATGCCAGGCGAAGTTTCCCAACAAGCAGAACTTGGGGGGCCACATGAGAACCCACACTGGTGAAAAACCCTTCAACTGTGACATTTGTAACGCAGGGTTCACCCACAAGCAGGGTTTGACCGTACACAAGAGAACCCACACTGGCGAGAAGCCGTTCTCCTGCGAACTGTGCGACGCCAAGTTCACCGTGAAACAGAGTTTGCAAAGCCACATGAGAACCCACACTGATGAACGATCCTTCCACTGCGATCAATGCAAAGCGACGTTCAAACACAGCAAGAGTTTGAGAACTCACAAACGTACGCACAAAAATAAAACAAACCAAAGTGATAATAATACAGACAAAAAGATCTCATGTTTAATATGTCAAGCGGAGTTCAAACAGAAAATAAGTCTAGCGATACACATGAGAGTTCACACTGGTGAGAAGCCCTACCCCTGCGAGTTCTGCAGTGAGAGGTTCTCAACGAAGCAGAGTCTAGCGAGCCACGCGAAGGCACACACGAGCAGCTCGCCGCACCGCTGCGTGTCGTGCTCGGCGCGCTTCAAGCACCGGCACAGTCTGGCTGCTCACGAGCGCACTCACTCGGGCGAGCTGCCGCACGCGTGCGCGGTGTGCGGCGCCAGGTTCGCGCGGCGCTGCAACCTCATGCGACACATGATGACGCACAGCGCGTAG
- Protein Sequence
- MDEPQQNSPTEYLIIPKKELLDVEVTYERENGEIDDFIQPKEEPDSLDNSETEQELDPLISVKVEPCDSEVHVVKNEDEVTSPQDADLCHRVMIHSVKSEPVEDIEAPLSDQPSYPSPSTHQSARTPHTQKPFACLHCETHFQYKYKLERHMRIHSVEKPFACEQCLSSFRHKNNLTEHMKIHIGEKPFFCDVCDAKFIRKYDLTGHMRSHTGERPFVCTLCDHTFTLRHHLTDHMKVHSGEKPFVCPICKAMFVRKYDLTMHSRFHSGDKTYSCEHCSKTFVRKTTYKVHMRSHTGEKPYTCDICQAKFPNKQNLGGHMRTHTGEKPFNCDICNAGFTHKQGLTVHKRTHTGEKPFSCELCDAKFTVKQSLQSHMRTHTDERSFHCDQCKATFKHSKSLRTHKRTHKNKTNQSDNNTDKKISCLICQAEFKQKISLAIHMRVHTGEKPYPCEFCSERFSTKQSLASHAKAHTSSSPHRCVSCSARFKHRHSLAAHERTHSGELPHACAVCGARFARRCNLMRHMMTHSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00205372;
- 90% Identity
- iTF_00205372;
- 80% Identity
- iTF_00205372;