Basic Information

Insect: Bicyclus anynana
Gene Symbol: -
Assembly: GCA_947172395.1
Location: OX359231.1:2130095-2132440[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.028 1.9e+02 2.4 0.1 22 49 3 30 1 33 0.86

2 15 0.21 1.4e+03 -0.3 0.1 22 48 61 88 53 93 0.79

3 15 6.7e-05 0.45 10.8 0.1 26 48 96 118 90 121 0.91

4 15 1.1 7.5e+03 -2.7 0.0 26 50 126 150 123 154 0.84

5 15 1e-05 0.069 13.5 0.4 26 50 155 179 142 183 0.87

6 15 0.022 1.5e+02 2.8 0.3 27 49 185 207 180 211 0.86

7 15 0.024 1.6e+02 2.7 0.0 25 47 214 236 208 242 0.84

8 15 0.16 1.1e+03 -0.0 0.1 26 48 249 271 237 274 0.85

9 15 2.4 1.6e+04 -3.7 0.2 24 44 306 323 295 327 0.60

10 15 0.67 4.5e+03 -2.0 0.0 25 43 334 352 333 355 0.78

11 15 4.6e-05 0.31 11.4 0.1 20 51 401 432 396 435 0.92

12 15 0.00014 0.96 9.8 0.4 26 49 464 487 459 489 0.90

13 15 0.0052 35 4.8 0.2 26 51 493 518 488 521 0.85

14 15 0.21 1.4e+03 -0.4 0.4 27 48 524 545 520 548 0.91

15 15 0.02 1.4e+02 2.9 0.1 26 47 616 637 601 640 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.028	1.9e+02	2.4	0.1	22	49	3	30	1	33	0.86
2	15	0.21	1.4e+03	-0.3	0.1	22	48	61	88	53	93	0.79
3	15	6.7e-05	0.45	10.8	0.1	26	48	96	118	90	121	0.91
4	15	1.1	7.5e+03	-2.7	0.0	26	50	126	150	123	154	0.84
5	15	1e-05	0.069	13.5	0.4	26	50	155	179	142	183	0.87
6	15	0.022	1.5e+02	2.8	0.3	27	49	185	207	180	211	0.86
7	15	0.024	1.6e+02	2.7	0.0	25	47	214	236	208	242	0.84
8	15	0.16	1.1e+03	-0.0	0.1	26	48	249	271	237	274	0.85
9	15	2.4	1.6e+04	-3.7	0.2	24	44	306	323	295	327	0.60
10	15	0.67	4.5e+03	-2.0	0.0	25	43	334	352	333	355	0.78
11	15	4.6e-05	0.31	11.4	0.1	20	51	401	432	396	435	0.92
12	15	0.00014	0.96	9.8	0.4	26	49	464	487	459	489	0.90
13	15	0.0052	35	4.8	0.2	26	51	493	518	488	521	0.85
14	15	0.21	1.4e+03	-0.4	0.4	27	48	524	545	520	548	0.91
15	15	0.02	1.4e+02	2.9	0.1	26	47	616	637	601	640	0.80

Sequence Information

Coding Sequence: ATGTCTGAACCGAACTACATATGCGACTACTGCAGTCGCGTTTTCACAAGGAAGTATAACCTCCAAACACACATTGAGAATTGTCATTTGGATATGTCTTGCTACTGCAATATATGTGACCAAGGTCTGGGGAGCCCCACTGGTCTGATGCTGCATTTAAGCAGAGGCCACAATAGCACCGGTCAACCCTTCCCTGAATGCGACGTTTGTGGAAGGGTATTCTCTAGAAGGCAGAACATAATCTCACATATGAAAACTGTGCATTTGCTGACCAATTCCGCGATTCCCTGCGAAATTTGCAGCAAAATTTTAACCACAGAACGGAATATGAAACGCCATATGAGTCTCATGCACAACCCTGACATCCAATACTTCTCTTGTCATGAATGCCAAAAAGTTTTTAAGCGAAAGGACGCTCTGAGTTCTCACATACAGGCCAATCATGGTGCATCCGATTCTATAAAGTGTGCTTTATGTGACAGAAGTTATAGGAATCACAAGAATTTGAGGAGACACATGGAAATGAGTCACGGGGACAAGGAAGAGTTTAAATGTGAGATTTGCCCGAAAACCTACACATCCAACCAAAGTTTGCGACGCCATATCAAAACTTGCCACTTGAACGAAAATAATGAACAACTGACATGCGAATATTGCTATAAATTGGTATTCGGGAAAGATAATTTGGAGAGCCATATCGCTTCCTACCATTCTCAATCAGCTGTGGATATCAAGTGTGATTTCGTTTGTGATGTATGCAAAATGGTTTTCGAAAACGAGTACTTATTGAGACAGCATGTGAAAACTGTACACAGTTTTCAACAGTTCTACGAATATTGTAGGAGTTCGTTATTAAAAGCTGAGAAAAGGTTGGAGAAGAACAGAAAGAAAAGAGACAATTGTCTACTATTCCAATGCGAGTACTGCCCACAAGTGTACGTAAGCGTTTACGAACTAAAAAATCACATGCGAGTGACGCACGACAAAGATTACTGTCTGTCAACTTGCAATGTCTGTTTCCGAAAATTCTTTAGCAAAGAAACTATAAAGAGACACAAAAAAGTCTGCATACCACCCAAAGACGTCAACAATTGCAGTCACTGCGACAAACTATTCACAGACATCTCCAGTCTCGAATTCCATATACGCATATTCCACCCGCAAGCACAAGTAGCCGATTCCTTCACATCTCATTTGGAGGATTCAGAGCAATCGTACAAATGTATGCACTGCGATAGGGTATACAACAGCGATAGATCACTAAAACATCACATAAAACTGAAACACACCGCAAACGATCCAGTGAAATGTCAGTACTGTGATAAAATTTGCAAAAACAAGTACTATTTGGCCTATCACATAACAACCCACAACAACACATCCTGGTCAAAGTGTGATTATTGCCACAAAGAATTCAAATCCAAAAGGAATATCAGAAGACACATTGAGTACACCCATTTGGGAATGCAAAGATACAAATGCATTGAATGCGAAACACTATTTAAAGAGAAACGGAGCTTGCGCAAACATGTGCGAGTGAAGCATCCGAATTCCCCAGTTTTCCCTCAATGTCATATATGCCACAAACGTTTCGAATCAGCAAAATCTTGCAAAACACATCTAAAACTGCTACATTCCTTCAACATGAACACGCATCCGTGCGATTTATGCTCAGTATCGTTCGATACTCTCGAAGCTTTGAATATACATTTATCAACTAAACATTTAGCGGCAGACGAGATATACAAATGCCAAGAATGTAACCTCATATTCAAAGGTCAAGAGCAATTCGGGAAACACTGCGAGACTTTCCATTCAATAACACCCTCGACTAAAACTGCGCCGCATTGCATAATTTGCTCGAAAGACTTCAGTTCGCGCAAAAATTTGAAACGACATATCAAGAAGTTCCACACAGAATTCAATGCTGATGAGCTAGCAACTTATGGGTCCAGAGGATTTTTGACGATAGACTGTGCTGAATGCATAAGGAGTTTTAATGAAGATTATTACTTCGAGGTTTATCTTGAAGTCAAGCATTCGAGGGAATCTATAGTGTTTACATGCGAATCATGCAATAATTCCTACAATTCTCTGGAGTTCGCCATTCAGAGATACAAGCAAAGTTTCGATGCATCCCAAAGCAAACTGTATATGAGTGAATTGTGTACAACTCAGATGAGTGATAATTCAGATTCTGGTGACGAAATGGAACCACAGAGTACTACTGGTGATCTTAAAGTGGAACCATTTGAAGTGGATTTTGAGGATATGGAACCTGAAAGCACAACATATGATATTAAATTGGAACCTAATGAATATGATGAAATTATGATGATGAAATAA
Protein Sequence: MSEPNYICDYCSRVFTRKYNLQTHIENCHLDMSCYCNICDQGLGSPTGLMLHLSRGHNSTGQPFPECDVCGRVFSRRQNIISHMKTVHLLTNSAIPCEICSKILTTERNMKRHMSLMHNPDIQYFSCHECQKVFKRKDALSSHIQANHGASDSIKCALCDRSYRNHKNLRRHMEMSHGDKEEFKCEICPKTYTSNQSLRRHIKTCHLNENNEQLTCEYCYKLVFGKDNLESHIASYHSQSAVDIKCDFVCDVCKMVFENEYLLRQHVKTVHSFQQFYEYCRSSLLKAEKRLEKNRKKRDNCLLFQCEYCPQVYVSVYELKNHMRVTHDKDYCLSTCNVCFRKFFSKETIKRHKKVCIPPKDVNNCSHCDKLFTDISSLEFHIRIFHPQAQVADSFTSHLEDSEQSYKCMHCDRVYNSDRSLKHHIKLKHTANDPVKCQYCDKICKNKYYLAYHITTHNNTSWSKCDYCHKEFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRVKHPNSPVFPQCHICHKRFESAKSCKTHLKLLHSFNMNTHPCDLCSVSFDTLEALNIHLSTKHLAADEIYKCQECNLIFKGQEQFGKHCETFHSITPSTKTAPHCIICSKDFSSRKNLKRHIKKFHTEFNADELATYGSRGFLTIDCAECIRSFNEDYYFEVYLEVKHSRESIVFTCESCNNSYNSLEFAIQRYKQSFDASQSKLYMSELCTTQMSDNSDSGDEMEPQSTTGDLKVEPFEVDFEDMEPESTTYDIKLEPNEYDEIMMMK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01021501;
90% Identity: iTF_00205362;
80% Identity: iTF_00205362;