Btha005779.1
Basic Information
- Insect
- Bhutanitis thaidina
- Gene Symbol
- -
- Assembly
- GCA_029286595.1
- Location
- JAGSMS010000010.1:869218-879909[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.2e-11 3.8e-08 33.1 0.0 2 39 174 212 173 216 0.88 2 4 2.2e-12 3.7e-09 36.3 0.1 2 39 228 265 227 268 0.93 3 4 2.2e-14 3.7e-11 42.7 0.0 4 45 285 327 282 327 0.96 4 4 3e-18 5.2e-15 55.1 0.0 1 43 334 377 334 378 0.96
Sequence Information
- Coding Sequence
- ATGCCCGGCTACGGAGCGTCTTATGTAAAATGCGAACCGCCGTCAGACGCAGAAGACAGCAACTCACAGTACTCACATAGTTATCTACAAAACCAGCTGCACACATCTGAACTGCTCACGGTTAAAGTGGAAGCCGTGGACCAAACCGAAGACGATGCCTCGTCGCATATTTTGCATCACCTGCAGGTGGGCAGCGGGTTGGAGCTGACGCCGCCCGCGCCGGCCGCGCCGGCCGCCACACCGGTGCGCGCGCGCCGCGGCCCGCCGCCCAGCGCCTCGCCCGCCGCCCTGGAGACCCTCGAGCCGGCCCGCGCCGCACCGGGAACTACACTCCTCGACAGGCGCATGCAGCTACTTAGCTCCAGTGATGTGGATTCTGACTTTGTGCCACTCCTGCCGGTAAAGGACGAGCCTCTGTCTGAAGGAGAACAACAGCAGCTCAGCGACGATGCGAGCGAAGTGGCAGATGAGGGGGCGGGCGACGGTGCGGACGCGCGCGGCAGCCCCAAGAGCTGGTCGCCGCGGGACATGGACCGCGCGCTGCAGGCCCTGCGCGACCGCCGCATGAGCCTCACCAAGGCGTCAGCGACTTACGGAATCCCATCCACGACGCTGTGGCAGCGCGCGCACCGGCTGGGCATCGACACGCCGAAGAAGGACGGCGGCGCCAAGAGCTGGAGCGACGGCGATCTGCGCGCGGCGCTGCACGCGCTGCGCGCCGGCACGCTCTCCGCCAACAAGGCCAGCAAGGCTTACGGTATTCCCAGTAGCACCCTATACAAAATAGCACGCCGTGAAGGTATCCGCCTCGCCGCGCCGTTCAACGCCGCGCCGACGTCGTGGCGCCGCAGCGACCTGCAGCTCGCGCTGGCGGCCATCCGCTGCGGCGCCGCGTCCGTGCAGCGCGCCGCCGCACAGTTCGGCATCCCCACCGGTACACTGTACGGACGATGCAAGCGGGAAGGTATTGAGTTGTCGCGATCCAATCCCACGCCCTGGTCAGAAGACGCGATGGGTGAAGCGTTGGAGGCTGTGAGgatAGGACAAATGTCCATCAACCAGGCAGCGATTCACTACAACCTACCGTACTCGTCTCTGTACGGCCGGTTCAAACGATGCAAATACCAGACGCAAGGTCTACAACCAATCCAGCAATCGGATATGCAGAAAAATGTGGAAACTGAGCATCAAAACCATAATCAAAACCAGGAGCCGCTGTCATACTACCACTCCTTACCACCTCACACGGTCCATAACCTGCCCGAGGAACAATCAAACCTACAAATTCCATACAGCCAACTGTTAGGCGAAGTTCATGAAACTATGCATGGTCATATGTTCCTTCAGGAGCAATATAGTAGCCAGGGGCTTTATTACACGCAAGGTTGCTACAGTGGGGTGGCCACCAGTTGA
- Protein Sequence
- MPGYGASYVKCEPPSDAEDSNSQYSHSYLQNQLHTSELLTVKVEAVDQTEDDASSHILHHLQVGSGLELTPPAPAAPAATPVRARRGPPPSASPAALETLEPARAAPGTTLLDRRMQLLSSSDVDSDFVPLLPVKDEPLSEGEQQQLSDDASEVADEGAGDGADARGSPKSWSPRDMDRALQALRDRRMSLTKASATYGIPSTTLWQRAHRLGIDTPKKDGGAKSWSDGDLRAALHALRAGTLSANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWRRSDLQLALAAIRCGAASVQRAAAQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRCKYQTQGLQPIQQSDMQKNVETEHQNHNQNQEPLSYYHSLPPHTVHNLPEEQSNLQIPYSQLLGEVHETMHGHMFLQEQYSSQGLYYTQGCYSGVATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00957878;
- 90% Identity
- -
- 80% Identity
- -