Bmor010740.1
Basic Information
- Insect
- Beris morrisii
- Gene Symbol
- -
- Assembly
- GCA_951812415.1
- Location
- OX638311.1:72587636-72589874[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.19 1.1e+03 0.7 0.2 16 46 198 230 194 236 0.70 2 6 0.003 18 6.5 0.1 22 44 262 284 257 292 0.85 3 6 0.14 8e+02 1.2 0.0 21 44 289 312 286 316 0.86 4 6 0.00066 3.8 8.6 0.0 21 43 317 339 306 345 0.84 5 6 0.00033 1.9 9.6 0.0 17 44 341 368 338 377 0.87 6 6 0.18 1.1e+03 0.8 0.0 26 47 378 399 371 405 0.88
Sequence Information
- Coding Sequence
- ATGTCGTTGGATGACGATAAAACGGAAAGTACATGCCGGACGTGTTTGCTTGAAACGCAGGAACTCCGATCGATTTTCCGTACGGGCAAAATTTGCGGTGAAATCACGATGCTGTCGGACATGCTGGCCGAGTGCACGGCACTTGAGATAACCGAAGATGACCTACTACCACAACACATTTGCAACAAGTGTGTGCTATTGCTCAGCAAAGCCTACATGTTCCGGCGGAATTGCATCAGTTCCGATAATACGCTGCGCGAAAAGATCAAATCCAAAGCTGCCGAAGAAGACGAAGTACTTGGCACTCTATACTTCTACGATGAACCGGAAGCTGAAAACACTGTCGAAGACGTTAACGAACAAATGCAATCGGACGACTACGACGAAATCCACATGAAACAAGAGGCCACACCGTCTGAATCGAATTCGATCGCCGAAGACGATACTATCGTCGAAAATCAATACGAACAAATCGACACAAACGAGAGTATCGAACAACTTGAAGAATTTGATAGCGTTTCGGAAGAGTATCGTACGCTTTACGGCATCGAAGTCGGAAATCGGGGAAAAGAAATCGTTTATCGAAAGCAACGTAAACGATCGTCACAAGTTCCCGGAACGCCATTCAAATGTTCAGTTTGCGGTAAAATCCTGAGCAATCATAGCTCGTACAAATATCACATGCAACTACATTCCGATAAGACGCCGTTCTTGTGCAGCGAATGCGGCGAAGGGTTCAAAACTAGGAATGCCTACGACGGACACATGACAACTCACGACGAAAACAATCCGCACAAGTGTAACGTTTGCGGGAAAACATATCGCCAAGCGGGATCGTTACGATCTCATATGCTTACACATACAGGCGAGAAGCCTTTCTTGTGTGGAATATGTGGCAAAGGGATGACACAAAAATCGGGATTTAAGAAACACATGCTAACTCATACGGACGAAAAACCACATCGTTGCGATATATGCGGCAGTTTATTCCGTTTCTCTAGCAATCTAATCACGCACAAAAGACGACATACCGGTGAAAAGCCATACACATGCACGATTTGTGGAAAATCATTTGTTGGAAGTGAACAGTTAAAACGGCACGGAACAATTCATACCACTGATAAAGTATTCAAGTGTGAAGTTTGCAAGAAAGTCTTTAAGCGGAAAAGTTCTTTACAATTGCATATGAATTTGCACACGaacgaaaataaatttgtatgccAAATTTGCGGTCGATGTTATCCGAACATGAAAGGCTTAAGCAATCATTTACAAACCCACAAAGAATACTATGAACAGATCGAACAGCAACAGCAAGAAGAACAACATGATGAAGCGGACGAACAGCACGAGCAAGAAGATGTGGACGAAGATCAACAGCACGTGGCAGAAGATGCCGAAATGAAggcaacttaa
- Protein Sequence
- MSLDDDKTESTCRTCLLETQELRSIFRTGKICGEITMLSDMLAECTALEITEDDLLPQHICNKCVLLLSKAYMFRRNCISSDNTLREKIKSKAAEEDEVLGTLYFYDEPEAENTVEDVNEQMQSDDYDEIHMKQEATPSESNSIAEDDTIVENQYEQIDTNESIEQLEEFDSVSEEYRTLYGIEVGNRGKEIVYRKQRKRSSQVPGTPFKCSVCGKILSNHSSYKYHMQLHSDKTPFLCSECGEGFKTRNAYDGHMTTHDENNPHKCNVCGKTYRQAGSLRSHMLTHTGEKPFLCGICGKGMTQKSGFKKHMLTHTDEKPHRCDICGSLFRFSSNLITHKRRHTGEKPYTCTICGKSFVGSEQLKRHGTIHTTDKVFKCEVCKKVFKRKSSLQLHMNLHTNENKFVCQICGRCYPNMKGLSNHLQTHKEYYEQIEQQQQEEQHDEADEQHEQEDVDEDQQHVAEDAEMKAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00203811;
- 90% Identity
- iTF_00203811;
- 80% Identity
- iTF_00203811;