Basic Information

Insect: Beris morrisii
Gene Symbol: -
Assembly: GCA_951812415.1
Location: OX638312.1:113525493-113528361[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.036 2.1e+02 3.1 0.0 18 44 170 196 165 203 0.80

2 5 0.0014 8.1 7.6 0.4 26 48 205 226 199 230 0.85

3 5 7.9e-05 0.46 11.6 1.6 22 48 228 253 225 257 0.88

4 5 0.25 1.5e+03 0.3 0.0 21 32 339 350 333 366 0.73

5 5 3.2e-06 0.018 16.1 0.1 21 52 367 398 363 400 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.036	2.1e+02	3.1	0.0	18	44	170	196	165	203	0.80
2	5	0.0014	8.1	7.6	0.4	26	48	205	226	199	230	0.85
3	5	7.9e-05	0.46	11.6	1.6	22	48	228	253	225	257	0.88
4	5	0.25	1.5e+03	0.3	0.0	21	32	339	350	333	366	0.73
5	5	3.2e-06	0.018	16.1	0.1	21	52	367	398	363	400	0.90

Sequence Information

Coding Sequence: ATGAATATTGATCAAATCTGCCGAACCTGTCTTTCAGACACGGAGCCGATGTTTCTTTTATTCGATGAAAAAGAACCTCAAACATTTGCTGGTCTGCCGCTTGTCGATATCCTGAATTTGTGCTCAAGTGCCGTGATTTCAGTAAACGACAgttttccaaataaaatttgtgCAACTTGTATATCCGAGGCAAATGCTGCATACTCTTTCAAATTGAAATGTGAAATGTCTCAAAAAACCCTTTACGAAACTTTTGCGGCCATAAAAGAAGAATCTGTAACAGATACGAGTGTCATTCCAGAAGTTATAACACCATTAGTTTGTATTAAGGAAGAGCAGAATGAAATTCGATTTATGAATGATCCTGTAAATGATTTTACCGAAACACTAATAAAAGACGAGTATTCTAGCGACGAGGATGAGGGCGATGATTCCATCGATGATTCATGGAACGCTCGTGATGCTGACGGCAGCTCTGAAGATTCGAAATGTTCTTCAGTTCAACAGAAATCAAACGATGAAGAGACCTATAAATGTGGCATATGTTTTAGTATTCACAAAAGTATAAAAGACGTTGGCGAGCATGTTGTAGCCAATCATACCAAGGAACAGTTGTGTTTGATTTGTAAAACAGagtTCCGAGATATAAATAATCTACGACGACACGCACTGAAACATGTACATCAAACATACACTTGCCCGTTATGCAATAAGATATTCAAAGTACGACAATATTTGCGACGACACTTAGTTCGACACTCGGAAGATAAACGATTTCAATGTACGcaatgtttgaaatttttttcgagtcGAATGGATTTAAAGCGTCACGGTATAGTTCACGATACAGAATTCAAGCACGCTTGCGAATTTTGCGATATGAAATTTAAACGTAAAGAGAACCTGGTATGTCATCGTGGTATTCATACGGGTGAATTGAAAAACAATTGCGAAGAATGCGGTAAATCGTTTCCTAGTCACTCGAAATTAGTTATACATAGACGAATTCATTCGGGCGAAAAACCGTTTGTTTGTGAGATCTGTAGTAAGGGATTTACGAAACGCTATGGATTAAATACTCATATGGGCGTGCATAAAGAAGAACGACCGTACAAATGTACACTTTGTTCTGGAGCATTCCGACAAAATTCGAATTTACGAGCGCATATTAAAATGGTACACAAAATGGAACCGACAGGATTGATGGAAGTGGAACAAACTTGA
Protein Sequence: MNIDQICRTCLSDTEPMFLLFDEKEPQTFAGLPLVDILNLCSSAVISVNDSFPNKICATCISEANAAYSFKLKCEMSQKTLYETFAAIKEESVTDTSVIPEVITPLVCIKEEQNEIRFMNDPVNDFTETLIKDEYSSDEDEGDDSIDDSWNARDADGSSEDSKCSSVQQKSNDEETYKCGICFSIHKSIKDVGEHVVANHTKEQLCLICKTEFRDINNLRRHALKHVHQTYTCPLCNKIFKVRQYLRRHLVRHSEDKRFQCTQCLKFFSSRMDLKRHGIVHDTEFKHACEFCDMKFKRKENLVCHRGIHTGELKNNCEECGKSFPSHSKLVIHRRIHSGEKPFVCEICSKGFTKRYGLNTHMGVHKEERPYKCTLCSGAFRQNSNLRAHIKMVHKMEPTGLMEVEQT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00202966;
90% Identity: iTF_00203861;
80% Identity: iTF_00203861;