Bmor016036.1
Basic Information
- Insect
- Beris morrisii
- Gene Symbol
- -
- Assembly
- GCA_951812415.1
- Location
- OX638311.1:158843031-158847842[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.6 4.4e+02 2.6 0.0 2 23 217 239 216 239 0.88 2 13 2e-05 0.0025 19.1 2.5 1 23 280 302 280 302 0.98 3 13 3.2e-05 0.0039 18.5 0.5 1 23 308 331 308 331 0.95 4 13 8.6e-05 0.01 17.1 5.7 1 23 340 362 340 362 0.97 5 13 0.0011 0.13 13.7 1.7 1 23 368 391 368 391 0.92 6 13 0.00011 0.013 16.9 0.6 2 23 403 424 402 424 0.97 7 13 0.019 2.3 9.8 2.3 1 19 430 448 430 453 0.85 8 13 9.6e-06 0.0012 20.1 2.1 2 23 463 484 462 484 0.96 9 13 2.6e-05 0.0032 18.8 2.3 2 23 491 513 490 513 0.96 10 13 1.6e-05 0.002 19.4 3.0 1 23 551 573 551 573 0.98 11 13 5.8e-05 0.007 17.7 4.9 1 23 579 602 579 602 0.95 12 13 0.00087 0.11 14.0 0.5 1 23 610 632 610 632 0.98 13 13 1.8e-06 0.00022 22.4 0.9 1 23 639 662 639 662 0.96
Sequence Information
- Coding Sequence
- ATGAGCATCAAGGTCGAGGAAAAATGCCGCACTTGTCTCAGGACGGACGGGCCTCTCATTTCACTTTTCAACTCGAAGCTAACTCAATACGATTTGGATCAAAACTCTGTCATCGATTTGTTAACCAGCTTCACTAAAATTCAGATTTCGGCCGAGGATGAATTTTCTCATCAAATTTGTATCGAATGTCTAGGCGAAATCGAGAGAATATATTCCTTCAAATTGAAATGCGAACAGTCCGATGCCACTTTGCGGACCCTTAAAAACGTGCAAACGAAAACGCTCATAAAATGTGAATACCAAAGTGAAACGGATCTTTACAATGACGAATATGACGAATGCCACAAAGAAATTGACGaatctgacgaagaagaacaaaCTGCAACATTTTCAGAGTCCGGAATGACCGACACCGATCAAAAATCATGCGATGAAATAATTGTCAAACATGAAGAGAATGCCGCAGACGAGCATATGCAAAGTGATGCTTCAGAAATCAAACTTGAAAAGGACCTGCAAGAAAGCGTTTGCCCAAAGGAAAATGTAAAAGAAGAGCCTGCCTTGGACATCAGTATCGATGAATGGTTGTATGATGAAAGCGATTCCGAACCGGAGAAAACACCAGATGAATCCATCGATGAGATCATTGAGTGCCCGGCATGTTTCGTACAATATGTTGGAATTGATGATCTTAAAACGCACATAATTGATAATCACACGGAAGGCAAATTATGTAGACTTTGTAATACAGAATTTGATTGTGAATCGCAACATTGTTGGTATCATCTTCGAGGAATTTCGCAACATCGAACCGGTAAAAATCAAAAACCAAACGAATTTCAGTGTACGATTTGTTTAAAACGTTTCGCAACGAAATGGTTTTTGAAACGACACGTTAAACGACACACAGAAGAGAAATCATTCAAATGTGAAATCTGTTCGAAAATGTTCAAAAAGAAACAGGCTCTTGAGAGTCACGCGATCGTGCAACATTCCACACAGTCCGTCAGCGACGATCATCAATGTAAAATATGTTCGAAAATGTTCGGAAACAAATATCATTTATTACGGCATAGTAAAATTCATAGCGAAGAAAAGCCATTCAAATGTGAAATCTGTTTGAAATCATTTAAGCAGAAGCGCAGCTTAGAATGCCATGTGATAGTGGCACATTCGACAAAGTCGAACAAAGCTAAAAACGATCTTCAGTGCAAAATATGCTTGAAAATTTTCGGAAATAAAGCCTACCTGTTGCGACATACTCAAATGCATACGGAGGAGAAACCGTACCAATGTGAAATCTGTTTAAAaacattcaaaaaaaaacaggcCCTAGAATGTCACAATATCGTTTTTCATTTTACGCAGCCCGTAAGCGACGAACTGCAGTGCAAGATATGTTCGAAAATTTTCGGAAATAAATCGCATTTAATACGACACAGTAAAGTTCACACGGACGAGACAACATTGAAATGTGATATTTGCTCGAAATCGTTTCTACGAAAAAACAATCTAACAACTCATATGCGACAGAGGCATGGTATCGAGATGAACAACAGTCGAAACGAGGACGTTAAGTGTGAATTGTGCTCGCGATTGGTCGGCAATCAATTAGTGCGGCATTTACGATGTCATACGAAAGAAACCCCTTTCAAATGTGAAGTATGTTCGAAAACGTTCGAGCATAAAGCGTATTTAAGACAACACGAAAAAATCCATAGCGATGAAAGGCCATTTAAATGTGATCTGTGCAAGCAAACATTtcgacataaaaaaaatttgaagagtcACGTACAAGCGAAGCATACGAGAACGCCCAAAACTGTTTATCAATGCGAGTCATGTTCGAAAAGTTTCGAAGAGGAAGCGGACTTAGATCGACATTTTCAAAGTCATTCGAACGAGGAGCCAGAATTTAAGTGTGAGATTTGTTCGAAGCAATTCGAACGAAAAGATCAACTAACCGTTCATATGGGAATGAAACATGCTATTGGACAACTGGCACTCAAATTTAACTCGTCTTGGTCAATATTTAAAGTAAGTAAATAG
- Protein Sequence
- MSIKVEEKCRTCLRTDGPLISLFNSKLTQYDLDQNSVIDLLTSFTKIQISAEDEFSHQICIECLGEIERIYSFKLKCEQSDATLRTLKNVQTKTLIKCEYQSETDLYNDEYDECHKEIDESDEEEQTATFSESGMTDTDQKSCDEIIVKHEENAADEHMQSDASEIKLEKDLQESVCPKENVKEEPALDISIDEWLYDESDSEPEKTPDESIDEIIECPACFVQYVGIDDLKTHIIDNHTEGKLCRLCNTEFDCESQHCWYHLRGISQHRTGKNQKPNEFQCTICLKRFATKWFLKRHVKRHTEEKSFKCEICSKMFKKKQALESHAIVQHSTQSVSDDHQCKICSKMFGNKYHLLRHSKIHSEEKPFKCEICLKSFKQKRSLECHVIVAHSTKSNKAKNDLQCKICLKIFGNKAYLLRHTQMHTEEKPYQCEICLKTFKKKQALECHNIVFHFTQPVSDELQCKICSKIFGNKSHLIRHSKVHTDETTLKCDICSKSFLRKNNLTTHMRQRHGIEMNNSRNEDVKCELCSRLVGNQLVRHLRCHTKETPFKCEVCSKTFEHKAYLRQHEKIHSDERPFKCDLCKQTFRHKKNLKSHVQAKHTRTPKTVYQCESCSKSFEEEADLDRHFQSHSNEEPEFKCEICSKQFERKDQLTVHMGMKHAIGQLALKFNSSWSIFKVSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00202894; iTF_00203055;
- 90% Identity
- iTF_00202894; iTF_00203055;
- 80% Identity
- -