Bcha012269.1
Basic Information
- Insect
- Beris chalybata
- Gene Symbol
- -
- Assembly
- GCA_949128065.1
- Location
- OX421895.1:2290858-2296243[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.2 1.6e+02 4.3 0.0 2 23 219 241 218 241 0.91 2 13 2.4e-05 0.0032 19.1 2.5 1 23 282 304 282 304 0.98 3 13 3.7e-05 0.005 18.5 1.9 1 23 310 332 310 333 0.95 4 13 0.0001 0.013 17.1 5.7 1 23 343 365 343 365 0.97 5 13 0.0029 0.39 12.5 2.6 1 23 371 394 371 394 0.91 6 13 0.00012 0.017 16.8 0.6 2 23 406 427 405 427 0.97 7 13 0.022 3 9.7 2.3 1 19 433 451 433 456 0.85 8 13 2.2e-05 0.0029 19.2 2.4 2 23 466 487 465 487 0.96 9 13 3.1e-05 0.0042 18.7 2.3 2 23 494 516 493 516 0.96 10 13 0.002 0.26 13.0 1.3 1 17 554 570 554 575 0.84 11 13 2.3e-05 0.0031 19.1 4.5 1 23 581 604 581 604 0.97 12 13 3.3e-05 0.0044 18.6 0.3 1 23 612 634 612 634 0.99 13 13 2.9e-06 0.00038 22.0 0.7 1 23 641 664 641 664 0.96
Sequence Information
- Coding Sequence
- ATGAGCATCAAGGTCGAGGATAAATGCCGGACTTGTCTCGGGACGGACGGGACTCTTAGTTCACTCTTCAACTCGAAGCTAACTCAATACGATTTGGATCAAAACACCGTCATCGATTTGTTAACCAGCTTTACTAAAATTCAGATTTCGGCCGCCGATGAATTTTCTCATCAAATTTGTATCGAATGTCTAGGCGAAATCGAGCGAATATATTCCTTCAAACTGAAATGCGAACAGTCCGATGCCACTTTGCGGTCCCTTAAAAACGTGCAAAAGAAACCACTCATTAAATGTGAATACCAAAGTGAAACGGATCTTTTCAACGACGAATATGATGAATGGCACCAAGAAATTGTGGAATCTGACGAAGAAGAACAAACTGGAACATTTTCAGAGTCCGGAATGACCGACACCGATCTAAAATCATGCGATGGAAAAATTGTCAAACATGAAGAGAATGCCGCAGACGAGCACATGCAAAGTGTTACTTCAGAAATCAAACTTGAAAAAGACCTGCAAGAAAGCGTTTGTCCCAAGGAAAATGTAAAAGAAGAGCCTGCCTTGGATATCAGTATCGATGAATGGTTGTATGATGAAAGCGAAGAAAGCTCCGACCCGGAGAAAACACCAGATGAATCCATCGATGAAATCATCGAGTGCCCGGCATGTTTCGAACAATACGTTGAAATTGATGATCTTAAAACGCACATAATTGATAATCACACGGACGGCAAATCATGTAGACTTTGTAATACAGAATTTGATTGTGAATCGCAACATTGTTGGTATCATCTTCGAGGAATTTCGCAACATCGAACCGGTAAAATTCAAAAACCCAACGAATTTCAGTGTACGATTTGCTTGAAACGTTTCGCGACCAAATGGTTTTTGAAGCGACACGTTAAACGACACACCGAAGAGAAATCCTTTAAATGTGAAATCTGTTCGAAAAGGTTCAAAAAGAAACAGGCTCTTGAGAGTCACGCGATCGTGCATCATTCCACACAGTCCGTCAGCGACGACGATCATCAATGTAAAATATGTTCGAAAATGTTTGGAAACAAATATCATTTATTACGGCATAGTAAAATTCATAGCGAAGAAAAGCCATTCAAATGTGAGATCTGTTTGAAATCATTTAAGCAGAAGCGCAGCTTAGAGTGCCATAAGATAGTGGCCCATTCGACAAAGTCGAACAAAGCTAAGAACGATCTTCAGTGCAAAATATGCTTGAAAATTTTCGGAAATAAAGCCTACCTGTTGCGACATACTCAAATGCATACCGAGGAGAAACCGTACCAATGTGAAATCTGTTTGAAAACATTCAAAAAGAAACAGGCCCTAGAATGTCACAATATCGTTTTTCATTTTACGCAGCCCGTAAGCGACGAACTGCAGTGCAAGATATGTTCGAAaattttcggaaataaatcGCATTTGCTGCGACACAGTAAAGTTCATACGGACGAGACAACATTGAAATGTGATATTTGCTCGAAATCGTTTTTACGAAAAAACAATCTAACAACTCATATGCGACAGAGGCACGGAATCGAGATGAACAGCAGTCGAAACGAGAACGTTAAGTGTGAATTGTGTTCGCGATTGGTCGGCAATCAATTGGTGCGGCATTTACGATGTCATACGAAAGAGACCCCTTTCAAATGTGAAGTTTGTTCGAAAGCCTTTCGTTATAAATCGAATATGAAGCACGAAAAGATCCATAACGATGAAAGGCGATTTAAATGCAAGTTGTGCAAGCAAGCGTTtcgacataaaaaaaatttgatccgTCACAAACAAGTGGAGCATACGAAAGCGCCCAAAACTGTTTATCAATGCGAGTCATGTTCGAAAAGTTTCGACGAGGAAGCGGACTTAGAACGTCATCTTCAAAGTCATTCGAACGAGAAACCAGAATTTAAGTGTGAGATTTGTTCGAAGCAATTCGAACGAAACGATCAACTAACCGTTCATATGGGAATGAAGCATGCTATTGGACAACTGGCACTCAAATTGAACTCGTCTTGGACATTCCAGGATCTTAGGAAAATGTGTAGGTTCTGCAGCTCATTTCGACATAGCATTAGAGGCGAATTCGATGGAATCCTCTTACTGTGA
- Protein Sequence
- MSIKVEDKCRTCLGTDGTLSSLFNSKLTQYDLDQNTVIDLLTSFTKIQISAADEFSHQICIECLGEIERIYSFKLKCEQSDATLRSLKNVQKKPLIKCEYQSETDLFNDEYDEWHQEIVESDEEEQTGTFSESGMTDTDLKSCDGKIVKHEENAADEHMQSVTSEIKLEKDLQESVCPKENVKEEPALDISIDEWLYDESEESSDPEKTPDESIDEIIECPACFEQYVEIDDLKTHIIDNHTDGKSCRLCNTEFDCESQHCWYHLRGISQHRTGKIQKPNEFQCTICLKRFATKWFLKRHVKRHTEEKSFKCEICSKRFKKKQALESHAIVHHSTQSVSDDDHQCKICSKMFGNKYHLLRHSKIHSEEKPFKCEICLKSFKQKRSLECHKIVAHSTKSNKAKNDLQCKICLKIFGNKAYLLRHTQMHTEEKPYQCEICLKTFKKKQALECHNIVFHFTQPVSDELQCKICSKIFGNKSHLLRHSKVHTDETTLKCDICSKSFLRKNNLTTHMRQRHGIEMNSSRNENVKCELCSRLVGNQLVRHLRCHTKETPFKCEVCSKAFRYKSNMKHEKIHNDERRFKCKLCKQAFRHKKNLIRHKQVEHTKAPKTVYQCESCSKSFDEEADLERHLQSHSNEKPEFKCEICSKQFERNDQLTVHMGMKHAIGQLALKLNSSWTFQDLRKMCRFCSSFRHSIRGEFDGILLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00203808;
- 90% Identity
- iTF_00203808;
- 80% Identity
- -