Bmor013891.1
Basic Information
- Insect
- Beris morrisii
- Gene Symbol
- -
- Assembly
- GCA_951812415.1
- Location
- OX638311.1:103509489-103511347[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00059 0.071 14.5 2.7 1 23 6 28 6 28 0.94 2 18 9.5e-05 0.011 17.0 0.4 3 23 101 122 100 122 0.97 3 18 0.00034 0.041 15.3 0.4 1 23 128 150 128 150 0.93 4 18 0.0049 0.59 11.6 0.5 1 23 155 178 155 178 0.94 5 18 0.00012 0.014 16.7 0.3 1 23 185 207 185 207 0.95 6 18 0.00021 0.026 15.9 1.1 1 23 212 235 212 235 0.92 7 18 1.1e-05 0.0014 19.9 1.2 1 23 241 263 241 263 0.97 8 18 0.0058 0.7 11.4 4.4 2 23 270 292 270 292 0.95 9 18 0.00025 0.031 15.7 2.5 1 23 299 321 299 321 0.97 10 18 0.008 0.97 10.9 1.2 1 23 326 349 326 349 0.95 11 18 5.1e-05 0.0062 17.9 1.3 1 23 356 378 356 378 0.98 12 18 1.4e-05 0.0017 19.6 1.1 2 23 384 406 383 406 0.96 13 18 1.4e-05 0.0017 19.6 0.5 1 23 413 435 413 435 0.98 14 18 0.00076 0.093 14.2 0.8 1 23 440 463 440 463 0.95 15 18 2.5e-05 0.003 18.8 0.3 1 23 470 492 470 492 0.97 16 18 7.1e-06 0.00086 20.6 0.4 3 23 499 520 497 520 0.96 17 18 3e-06 0.00036 21.7 1.1 1 23 525 548 525 548 0.98 18 18 4.5e-05 0.0055 18.0 1.3 1 23 553 576 553 576 0.98
Sequence Information
- Coding Sequence
- ATGGAATGCAGTATATTTCTATGTGATGACTGTAACAAGACATTCACgaattatcaaaaatatttcaaccatCGTTTGGAACATAAGGCAAATTTTAAGGGATGTGAACGGAATATCGATGGGGACAATACACTTGACACATGCCCTATATGCTTCATTGACTTGACTGATAATTACTTTGGAACTAGACTGATGAGATCAGATGAACAAGTTAAATGCCACTTTGATTTCAAAGTGTTTTACGACGAAAACCATGATAGAGCGGGGGAGGAAAGAGtttcaaaaaatgttcgccGCATTTGCCCGCACTGTCGCCGGGGATTTCCTCGTCGAATACTCCTAAAATGGCACATTGAAACATGGCATGCTGGCGACCGAAAATATCCGTGCGAAAATTGCGCGAAAATATTCTCTACCAAACAGGATCTAAAAGAGCATAATGTAAGTCACACCGTTAGGTATTTTGAATGCGCTCTTTGCAAACAGGATTTCGAAACGGAGGAGCAATTAAAAATGCATCACGATATTGTACATACAAAACGCGATAAAATCTATCGGTGCGATGAATGTCCCAAAGTTTTTACCACTAAAGGCGGCCAACAACTACACAAAATCCTTCATACCGATAAATGTTTCATAtgtaaattttgtcaaaaaagaTTTCCACGGCAAGCTGATCTCGATCGGCACGAATTCAGTATGCACATTAATCCACAAGTATTCTCGTGTTCAATTTGTGAAAAATCCTATTCCAGCAaggaatatttgaaaattcacGAAACTACTCATGATGATTCGAAATCGCCGACATGTCCACATTGCCATAAGAAATTTTCATCAAAACTGGTTGCAAAGCGACACATTGAAATGTTCCACGTCGAAATCGATCAACAGCACACTTGTGAGATTTGTACGAAAGTATTTACACGCATCAAATACCTGGAATATCACAAGATATCGCATTCAAATGAGCAATACAAATGTTCCGAATGTTCGAAAGTGTTTCTTCGGGAAGCAAATCGAGCCCGACACTTTCAGAGGATGCACGTTAATGTTGGCCAACAGTTCACTTGCGACCAGTGCGACAAAATATTTTCACGTATCGAATCCCTTAGCTATCACAAGAGACTGCACACCGGTCAGTATCTAACGTGTCCGGAATGTTCGAAGAAATTTGTTCATCGACGAGATCTTGGAGCACATATTAGACGTATGCATACAAAACAAGATGAAGAATATCCGTGTCTGATGTGTCCAAAAGTATTTACACGAACGCAAACCCTTCGGGTACACGAACAGACTCACATGAACGAAGGATTCATATGTTCGCAATGTGGTGCTCGCTTTGCAAACGGAAAATATCTtcgaaatcatatttttcgaaaacatacAACTCATAATCGGACCTATGCATGCGTTAAATGCGACAGAGTTTATAAGAGGCTCGAATCGTTAAGAGTACACCAGAGTGTGCATCGTGGAAATTGGGTTAATTGCGAATTATGTCCGAAAAAGTTTCCCCGGCAATCTGCACTGAATTATCATATTAAAAGGACCCATGAGAAAGGGACGTTTCAATGTGATGACTGCGGGAAAGAATTTGATAAGAAGGTTACGCTGAAATATCATCAACAAAAAGCACATGAAAAAGTCCGTTATAAGTGTAAGATATGTGAGAACACGTACACGTCCCCGAGTGGTTTGTATACTCACGTTCGGAAAAAACATACGCTTAAAAAAAACGACGGCGTGGTTACAGCACTAGAAGGCAAGAGTTTATCAAAGAATGCGGTCAATGTCCCATGA
- Protein Sequence
- MECSIFLCDDCNKTFTNYQKYFNHRLEHKANFKGCERNIDGDNTLDTCPICFIDLTDNYFGTRLMRSDEQVKCHFDFKVFYDENHDRAGEERVSKNVRRICPHCRRGFPRRILLKWHIETWHAGDRKYPCENCAKIFSTKQDLKEHNVSHTVRYFECALCKQDFETEEQLKMHHDIVHTKRDKIYRCDECPKVFTTKGGQQLHKILHTDKCFICKFCQKRFPRQADLDRHEFSMHINPQVFSCSICEKSYSSKEYLKIHETTHDDSKSPTCPHCHKKFSSKLVAKRHIEMFHVEIDQQHTCEICTKVFTRIKYLEYHKISHSNEQYKCSECSKVFLREANRARHFQRMHVNVGQQFTCDQCDKIFSRIESLSYHKRLHTGQYLTCPECSKKFVHRRDLGAHIRRMHTKQDEEYPCLMCPKVFTRTQTLRVHEQTHMNEGFICSQCGARFANGKYLRNHIFRKHTTHNRTYACVKCDRVYKRLESLRVHQSVHRGNWVNCELCPKKFPRQSALNYHIKRTHEKGTFQCDDCGKEFDKKVTLKYHQQKAHEKVRYKCKICENTYTSPSGLYTHVRKKHTLKKNDGVVTALEGKSLSKNAVNVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00324634;
- 90% Identity
- -
- 80% Identity
- -