Bmor027272.1
Basic Information
- Insect
- Beris morrisii
- Gene Symbol
- -
- Assembly
- GCA_951812415.1
- Location
- OX638313.1:59603456-59616976[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-11 7.7e-08 32.8 0.0 8 70 202 260 197 264 0.78 2 2 3.3 2.3e+04 -4.0 0.0 10 25 304 319 300 321 0.77
Sequence Information
- Coding Sequence
- atggaATCGGAGAATTTGGAAATGGTATCGGGAACTGAAAAGGAGTCCCACGATGCTGCAAATTCACTTGCTGATGAAAGTGTGGAAGAAAATTCGACAAAGCTGACGCTAGCTGTAACTTCGGACGAGGACAGTCGTGAATCAAGCAAGGAACCGAATCTTGAACGGGATATTAAACCTGATCCACTTCCCATTCAGCAAGCGGCTATTGCCGCAGTTAATCATAAATTTACTACAACACTGGCTCAAGGAGGAGCACTAAAACGTAAAAAGTCTGCGGTGGAATTGTCGAGCGACGAAGAAGATTTTGCTGGTTTCGACGAATGCAACGGCGGCCCTGAACATAATCCATTCAAAAAGATCAAAGAggaaataacttcagaaggcgAACAAGAAACTGAACGACAAATTATCATTGAAGGAAATTCAGATCTTACCTCAACAATTAAAGCTGAGACCAGCGAATCCGGCGATGAGAATAAACCTCCTGACACCGCGATGCTAATGCCGGAAGAAAAGCTGaatgaaaaatcagaattagAAGATAAACCAGCGAATATTTCTTCCGCGCTAAAGCAGCGTTCAATTAAGGATCCTATTTATCGAAAACCATTTGCATTGGGATGGAAGCGGGAAGTAGTCTACAGAGCGATTCCAGATGCGAGTAAAGATAAAGGCGAAGTATATTACATAACCCCCATGGGCAAGAAAATCCGAACGCGAACGGAAATTCAATTGCATATGCCGCCTGATCTCACACTAGAGAATTTCACTTTTGCTAGAGAACCAATCGGCATGGGTCCCGACGAAGAGATGATCCGAAATGCCAAGCCGACGGCGCGATCTACACCAACAGACGTTCCTCTTGGTAAACGAATTCCAAAACCAAAAGGACCAAAAGGTGCTAGTCCTCCACCGCAGGGATGGACACCTGTACGGGCTGTAAAATCGTCTGGCCCTGCAAGTTCTCCGCGTCCAGTAAGTTCAATTCGTACATCCGAGgatggtgaaagtaaaatttcaatagCGGCAAAATCAACTACGAAATCCAACAAATCCCAGAAAAAAGGGGAGCCATGCACCATAGAATGCGTGCTTGCAATGGGAATGATACCTCAACTCCAGTGCACAAAATGCTTGTGTTTGTACCATCACGAATGTATTGGATTGGATCGGAGTGATGGCAGACTAAACaatgggactaattctggaggAAGCAATTCCGGATCAAAGAAAAATGCTGAAGGATATATTTGTGAGCTTATTATAGTGATGCGTGATTGCGAGATATTCGGACAATCGCAATCAGCCATATTTACACAACAACaatcgaataaaaattcaacctaa
- Protein Sequence
- MESENLEMVSGTEKESHDAANSLADESVEENSTKLTLAVTSDEDSRESSKEPNLERDIKPDPLPIQQAAIAAVNHKFTTTLAQGGALKRKKSAVELSSDEEDFAGFDECNGGPEHNPFKKIKEEITSEGEQETERQIIIEGNSDLTSTIKAETSESGDENKPPDTAMLMPEEKLNEKSELEDKPANISSALKQRSIKDPIYRKPFALGWKREVVYRAIPDASKDKGEVYYITPMGKKIRTRTEIQLHMPPDLTLENFTFAREPIGMGPDEEMIRNAKPTARSTPTDVPLGKRIPKPKGPKGASPPPQGWTPVRAVKSSGPASSPRPVSSIRTSEDGESKISIAAKSTTKSNKSQKKGEPCTIECVLAMGMIPQLQCTKCLCLYHHECIGLDRSDGRLNNGTNSGGSNSGSKKNAEGYICELIIVMRDCEIFGQSQSAIFTQQQSNKNST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -