Bmor017962.1
Basic Information
- Insect
- Beris morrisii
- Gene Symbol
- -
- Assembly
- GCA_951812415.1
- Location
- OX638312.1:49337143-49345413[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.6e-10 4e-07 30.6 0.0 3 39 10 46 9 51 0.86 2 2 0.75 5.3e+02 1.4 0.0 17 26 391 400 383 400 0.84
Sequence Information
- Coding Sequence
- ATGGCATCACAGCGAAAATACAACGTTGAAGACATTGATGTTGCCCTACACGAAATAAGAAATAGCCTTTCGATCCATGCAGCAGCAAAAAAGTATAACATTCCAAGGCCAACGCTCCAAAATAGAATACATCAACGATCTGCGAAAAGCAAAATGGGTCCCAAAACTGTGCTGACATCCGTTGAAGaatcaaaaattgttgaatGGATTTTTGAGAACCACGCAAGAGGCTTTCCAAGAAGGAAACATGAGGTCCGTGGTGTTGTGAAAGAATTCTTGAACGCATGCCCTAGatcaaatttattcattaaaaactATCCTGGACAGAAATGGTATAAATCTTTTCTGAAAAGGCATCCTCAAATCGCATTAAGAACGCCGGAAGCGGTTACGGAATCAAGCGCTTGCGTCTCTGAAAGAGATATCAGAGGATGgttcaatcaaatttttaattattttaaagaaaaagagtTAACTGATGTCCTAAAAGACCCATCTAGAGTTTTCAATGGGGATGAATCAGGGTTTCTTTTATGCCCAAAAGGTGGTAAGGTTTTGGCTCGAATGGGATCAAAAACCGTTTATGAAGTCGATAAAGGAAGAGCAAAGGAAAGCATTACTGTAATGTTCACTTTTTCAGCTAATGGCTTCATTTTTCCTCCAATGATTGTATATCAGTATAAACGAATTCCAAAAGATATTATCGACTTGATCCCGAATGGAATTAACTATACAAAAACGGATTCAGGTTGGATGACATCTGAAGCGTTTCAgtattatattgaagaaattttttatcCTACATTAGTATCAAATAATGTTCAGTTTCCCGTGATCCTCTATGTCAATGGGCATAAAACGCATCTTAGTTATGCTCTCTCAAAAATCTGCAAAGAGCTCAAGATTATACTGATATGCTTGTATCCAAATTCAACAAGAATTCTTCAGCCAGCTGATGTTGCCATTTTCAAACCGATCAAACTATGTTGGACAAAAGAACTTCAACAATGGAGAATAAATAATCTTGAAGAACAATTCACAAGAAAATATTTCGCACCTTTGCTAAAGAAAGTTGTCGATAAATGTGTGAAAAAAGACACAATAATTAACGGCTTTCGAACCTGTGGTTTGTATCCTTTCGATGCAAATGCGATAGAATTTTCGAAGTGTCTTGGGACGTCAAAAGCAGCCGATGAATATATCAGCCCCGATTCACCTAACAATCTAAAAACCATCAATTTATCAGAGTTTAAAGAGATTATTGGGGATGAGAAAGTTCAACAATTGGAAACCATCGAAACTAGTTGTTGTACATATTCGGCAGATCTCCTATTGTTACATAAAATGTATGAAACTTTAAAAATGCGTTCCGCGACAAATTTTCAAAATGTATCGCTTGTTGCGCCTAAAACAGTACAACATTTGGAAGTTGGAGAAGAAGTTCTAATAAGCCAAATTGAAGAAGTCGAACAATTCACGAATCATGCTCAGACGGAAACAACAATTATGGACGTGTCGGATATACCGATTGTTTTCATTGAAAATGAGtggaaatatgaagaaaatgagataactgactttttaaaagtaattaaaacgCCAGCCAGAAAAGGAATAAAACATGTAAAGCGGCAATCTTTCATAGTTTCGTCAACCCCATTTCAAACTTCCATGGAGCAAAAAATGGCAGAAAAAGCTGCAGTAGTTGGAGCATCGCTTTACGGTCGCGCATCGCATCTTCTATAG
- Protein Sequence
- MASQRKYNVEDIDVALHEIRNSLSIHAAAKKYNIPRPTLQNRIHQRSAKSKMGPKTVLTSVEESKIVEWIFENHARGFPRRKHEVRGVVKEFLNACPRSNLFIKNYPGQKWYKSFLKRHPQIALRTPEAVTESSACVSERDIRGWFNQIFNYFKEKELTDVLKDPSRVFNGDESGFLLCPKGGKVLARMGSKTVYEVDKGRAKESITVMFTFSANGFIFPPMIVYQYKRIPKDIIDLIPNGINYTKTDSGWMTSEAFQYYIEEIFYPTLVSNNVQFPVILYVNGHKTHLSYALSKICKELKIILICLYPNSTRILQPADVAIFKPIKLCWTKELQQWRINNLEEQFTRKYFAPLLKKVVDKCVKKDTIINGFRTCGLYPFDANAIEFSKCLGTSKAADEYISPDSPNNLKTINLSEFKEIIGDEKVQQLETIETSCCTYSADLLLLHKMYETLKMRSATNFQNVSLVAPKTVQHLEVGEEVLISQIEEVEQFTNHAQTETTIMDVSDIPIVFIENEWKYEENEITDFLKVIKTPARKGIKHVKRQSFIVSSTPFQTSMEQKMAEKAAVVGASLYGRASHLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00203434;
- 90% Identity
- iTF_00203434;
- 80% Identity
- -