Bcha001569.1
Basic Information
- Insect
- Beris chalybata
- Gene Symbol
- Zbtb41
- Assembly
- GCA_949128065.1
- Location
- OX421894.1:25919925-25921280[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.035 2.2e+02 3.3 0.1 21 51 86 116 83 118 0.82 2 9 2.5e-05 0.15 13.4 0.1 21 51 172 202 164 206 0.91 3 9 0.33 2e+03 0.2 0.0 21 48 205 232 201 237 0.73 4 9 0.25 1.6e+03 0.6 0.0 21 48 233 260 228 265 0.85 5 9 0.021 1.3e+02 4.0 0.1 25 47 270 292 258 297 0.80 6 9 0.013 82 4.7 0.1 21 45 294 318 289 323 0.86 7 9 0.0013 7.8 7.9 0.1 21 48 355 382 349 384 0.90 8 9 2.4 1.5e+04 -2.6 0.1 27 41 394 408 392 415 0.65 9 9 0.0029 18 6.8 0.9 21 49 416 444 411 448 0.89
Sequence Information
- Coding Sequence
- ATGCTGAAGCAACTAAAGGACAATGGAAAAAGGATGAATAATCTCAACGACAATGGGTCTCATATTGAAGAGCATATTGAACTAATTAAACCAGAAAATTTCTACACATCAAATAAAGAACAACAAGAATTGGCTACTATACCAGAAACTTCCGAGCAAGGGTTTACGAAAGAAGAGATACTTCTCGTTCAAGAAATCAAACAAGAACCTGAACTCGAGATAAATGTGGAAGGAGACTTTGACGAAGTtagaagaagtaaaaaaaagcTTCAATGTACGATATGTACGAAATTATTCCATTATAAATCTAACTTTGAGCGGCATATGAGAATTCACACAGGAGAGAAACCATTTCAGTGCGATGAATGTCCAAGCAAATATCAACTTAAGTGCTCTTTGACTGAACATACGAGAAATGTACATCTCGGTGTAAGAGGAAAGTTTCAATGTgcgatatgttcgaaattattcacACGTAAGAATAGTCTGGATGTGCATATGAGAACTCATACAGGAGAAATGCCATTTCAGTGCGAAATATGTTCGACAAAATATCGGCTTAAGCGCAACCTAAGTGAACATATGTACGCGAAACATTTCGATAGAACAACGTCTATTGCGAAATTTACTTGTACGATATGTTCCAAGTTTTTCCCTGAAAAAAACAAACTGGATCTGCATATAACACTGCATACAGGAGAGAAACCATTCCAGTGCGATGTATGTTCGAAAAAATATCGCTTTAAGACCAGTTTAACGGAACACATGCTTTCAAAACATAACGATAGAAAGACGAATATTGCAAACTTTACTTGTGAGATATGTTCGACATTATACCGACAGAAATTTAAATTCGACGAGCATATGAGAATTCATACAGGAGAAAAGCCGTTTCAATGTGAAGTTTGTTCAACAAAATATCGGCTTAAGAAAAGCTTGAAGAAACATATACTAAGGACTCATGCTGATATTATACCTAATAGCAGAAAGTTTAAGTGTTCAACATGTTCGAAACTATGCGAAAGTCAAGCTCGTCTGAATGATCATATGAGAATTCATACAGGAGAACAACCTTTTCAGTGTGAAGtatgtaagaaaaaatttcgCACTAAGAGCAGTTTGAGAGAACATATGCTAATGATACATGCAGATTTATCATCCAATGGCTGTCAGTTTAAATGTACGATATGTTCGAAAGCATTCGATCGTCAATGTCGTTTGAACGATCATATGAGAATTCATACAGGTGAACAACCATTTCGATGTGAAGTGTGTTCGAAATCATTTCGACTTAAATGTAGTTTGCGGTCACATGTGCAAAGGACTCATGCTGATAAAATGCCCAATACAGTTTGA
- Protein Sequence
- MLKQLKDNGKRMNNLNDNGSHIEEHIELIKPENFYTSNKEQQELATIPETSEQGFTKEEILLVQEIKQEPELEINVEGDFDEVRRSKKKLQCTICTKLFHYKSNFERHMRIHTGEKPFQCDECPSKYQLKCSLTEHTRNVHLGVRGKFQCAICSKLFTRKNSLDVHMRTHTGEMPFQCEICSTKYRLKRNLSEHMYAKHFDRTTSIAKFTCTICSKFFPEKNKLDLHITLHTGEKPFQCDVCSKKYRFKTSLTEHMLSKHNDRKTNIANFTCEICSTLYRQKFKFDEHMRIHTGEKPFQCEVCSTKYRLKKSLKKHILRTHADIIPNSRKFKCSTCSKLCESQARLNDHMRIHTGEQPFQCEVCKKKFRTKSSLREHMLMIHADLSSNGCQFKCTICSKAFDRQCRLNDHMRIHTGEQPFRCEVCSKSFRLKCSLRSHVQRTHADKMPNTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00202882;
- 90% Identity
- iTF_00202882;
- 80% Identity
- iTF_00202882;