Bcha021004.1
Basic Information
- Insect
- Beris chalybata
- Gene Symbol
- Aef1
- Assembly
- GCA_949128065.1
- Location
- OX421895.1:108819939-108820388[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.012 77 4.8 0.1 22 49 17 44 11 47 0.85 2 4 1.1e-05 0.068 14.6 0.0 21 52 44 75 41 76 0.89 3 4 0.0041 26 6.3 0.0 21 51 72 102 70 103 0.87 4 4 9e-05 0.56 11.6 0.1 21 46 100 125 98 130 0.90
Sequence Information
- Coding Sequence
- ATGTCTCGTGCATTAAGCCGTACAATGACTGTAGCTAATGGTTCTGTGGACAAACCGTTCCAATGTAACGTATGCGAAAGACGTTTCCGTCAATTGAGTACCCTAACGAATCACGTTAAAATCCATACCGGCGAAAAGCCCTACAAATGTTCAATATGCGAAAAACATTTCCGACAATCCAGCACACTAACGAATCACTTGAAAATTCATACGGGCGAAAAACCATTCAATTGCACGTATTGCGGTAAACAGTTCCGGCAATTGAGCACGCTTACGAATCATTTGAAAATTCATACCGGCGAAAAGCCATTCGAATGTGTTATTTGTAAAAAACAATTCCGTCAATCGAGCACACTAAATAATCATATAAAAATTCACATGACCGATAAATTGTATTTAGCGTGTAGTAATAATACATCGGATATTAAAGCCGAAGAGGACGAAGCATGA
- Protein Sequence
- MSRALSRTMTVANGSVDKPFQCNVCERRFRQLSTLTNHVKIHTGEKPYKCSICEKHFRQSSTLTNHLKIHTGEKPFNCTYCGKQFRQLSTLTNHLKIHTGEKPFECVICKKQFRQSSTLNNHIKIHMTDKLYLACSNNTSDIKAEEDEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00203877;
- 90% Identity
- iTF_00203877;
- 80% Identity
- iTF_00203877;