Basic Information

Insect: Bemisia tabaci
Gene Symbol: -
Assembly: GCA_903994105.1
Location: NW:7-1703[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 1.1 1.3e+03 -0.8 0.0 25 44 9 28 4 37 0.83

2 17 0.83 9.4e+02 -0.3 0.1 21 43 33 55 25 64 0.78

3 17 0.0025 2.8 7.8 0.0 21 45 61 85 55 93 0.86

4 17 0.82 9.3e+02 -0.3 0.0 21 43 89 111 86 117 0.83

5 17 0.074 84 3.0 0.0 21 43 117 139 108 144 0.90

6 17 0.0037 4.2 7.2 0.0 23 45 147 169 142 176 0.88

7 17 0.2 2.3e+02 1.6 0.0 21 43 173 195 170 206 0.87

8 17 1 1.2e+03 -0.6 0.0 21 43 201 223 194 233 0.80

9 17 0.44 5e+02 0.5 0.1 21 44 229 252 215 260 0.82

10 17 0.1 1.2e+02 2.6 0.0 23 48 259 283 254 289 0.85

11 17 1.7 2e+03 -1.4 0.0 21 43 285 307 282 313 0.78

12 17 0.0069 7.8 6.3 0.0 23 45 315 337 308 345 0.87

13 17 0.32 3.7e+02 1.0 0.1 21 43 341 363 338 368 0.86

14 17 0.051 58 3.5 0.1 19 44 367 392 360 400 0.82

15 17 0.0033 3.8 7.3 0.0 21 44 397 420 393 427 0.90

16 17 1.6 1.8e+03 -1.2 0.0 25 44 429 448 423 457 0.83

17 17 0.48 5.5e+02 0.4 0.0 17 43 449 475 439 484 0.79

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	1.1	1.3e+03	-0.8	0.0	25	44	9	28	4	37	0.83
2	17	0.83	9.4e+02	-0.3	0.1	21	43	33	55	25	64	0.78
3	17	0.0025	2.8	7.8	0.0	21	45	61	85	55	93	0.86
4	17	0.82	9.3e+02	-0.3	0.0	21	43	89	111	86	117	0.83
5	17	0.074	84	3.0	0.0	21	43	117	139	108	144	0.90
6	17	0.0037	4.2	7.2	0.0	23	45	147	169	142	176	0.88
7	17	0.2	2.3e+02	1.6	0.0	21	43	173	195	170	206	0.87
8	17	1	1.2e+03	-0.6	0.0	21	43	201	223	194	233	0.80
9	17	0.44	5e+02	0.5	0.1	21	44	229	252	215	260	0.82
10	17	0.1	1.2e+02	2.6	0.0	23	48	259	283	254	289	0.85
11	17	1.7	2e+03	-1.4	0.0	21	43	285	307	282	313	0.78
12	17	0.0069	7.8	6.3	0.0	23	45	315	337	308	345	0.87
13	17	0.32	3.7e+02	1.0	0.1	21	43	341	363	338	368	0.86
14	17	0.051	58	3.5	0.1	19	44	367	392	360	400	0.82
15	17	0.0033	3.8	7.3	0.0	21	44	397	420	393	427	0.90
16	17	1.6	1.8e+03	-1.2	0.0	25	44	429	448	423	457	0.83
17	17	0.48	5.5e+02	0.4	0.0	17	43	449	475	439	484	0.79

Sequence Information

Coding Sequence: ATGACTCATGCTGATGAAAAATTCTTCAGTTGCGATCAGTGCAATGCATCTTTCAAAACAAAGCGTCTTTTAAAGCAACATAAACGTGTCCATACAGATGAAAGACCGTTCAGTTGCACTAAGTGTAATGCATCTTTTAAAAGTAAGAACGGTTTGGTTAGTCACGTGATGAGTCATACGAGCTTAAAACCGTTTACTTGCAGTGAGTGTAATGCATCTTTTAATCAAAAGAGTGTTTTACGTAAGCATATAATGACTCATACGGAtgaaaaaccattcagttgcgaTCAGTGCAATGCATCTTTCAAAACAAAGCAAATTTTAAAGAGTCATAAATTCGTTCATACGGATGAAAGACCGTTTAGTTGCACTAAGTGCAATGCATcttttaaaaggaagaaaaatttggTTGTTCATGCGATGAGTCATACGGGCTTGAAACCGTTTACTTGCAGTGAGTGTAATGCATCTTTTAATCAAGAGAGTGCTTTACGTAAGCATATAATGACTCATACGGAtgaaaaaccattcagttgcgaTCAGTGCAATGCATCTttcaaaaaaaagcaaattttaaaGCAACATAAACTTGTCCATACAGATGAAAGACCGTTCAGTTGCACTAAGTGCAATGCATCTTTTAAAAGTAAGAACGGTTTGGTTAGTCACGTGATGAGTCATACGAGCTTTAAACCGTTTACTTGCAGTGAGTGTAATGCATCTTTTAATCGTAAGAGTGTTTTATGTCAGCATATAATGACTCATACGGATGGaaaaccattcagttgcgaTCAGTGCAATGCATCTTTCAAAACAAAGCGTGTTTTAAAGCAACATGAACTTGTCCATACAGATGAAAAACCGTTCAGTTGCACTAAGTGCAATGCatcttttaaatggaagaaCGGTTTGGTTAGTCACATGATGAGTCATACGGGCTTGAAACCGTTTACTTGCAGTGAGTGTAATGcatcttttaaattaaagagtgcTTTACGTAGGCATATAATGACTCATACGGAtgaaaaaccattcagttgcgaTCAGTGCAATGcatgtttcaaaacaaaaagttttttaaagaagcaTAGACTCGTCCATACGGATGAAAGACCGTTCAGTTGCACTAAGTGCAATGCATCTTTTAAAAGGAAGACCGGTTTGGTTCGTCACGTGATGAGTCATACGAGCTTGAAACCGTTTACTTGCAGTGAGTGTAATGCATCTTTTAATCAAAAGAGTGATTTACGTGAGCATATAATGACTCATGCTGATGAAAAATTCTTCAGTTGCGATCAGTGCAATGCATCTTTCAAAACAAAGCGTCTTTTAAAGAATCATAAATCTGTCCATACAGATGAAAGACCGTTCAGTTGCACTAAGTGCAATGCATCTTTTAAAAGTAAGAACGGTTTGGTTAGTCACGTGATGAGTCATACGAGCTTGAAACCGTTTACTTGCAGTGAGTGA
Protein Sequence: MTHADEKFFSCDQCNASFKTKRLLKQHKRVHTDERPFSCTKCNASFKSKNGLVSHVMSHTSLKPFTCSECNASFNQKSVLRKHIMTHTDEKPFSCDQCNASFKTKQILKSHKFVHTDERPFSCTKCNASFKRKKNLVVHAMSHTGLKPFTCSECNASFNQESALRKHIMTHTDEKPFSCDQCNASFKKKQILKQHKLVHTDERPFSCTKCNASFKSKNGLVSHVMSHTSFKPFTCSECNASFNRKSVLCQHIMTHTDGKPFSCDQCNASFKTKRVLKQHELVHTDEKPFSCTKCNASFKWKNGLVSHMMSHTGLKPFTCSECNASFKLKSALRRHIMTHTDEKPFSCDQCNACFKTKSFLKKHRLVHTDERPFSCTKCNASFKRKTGLVRHVMSHTSLKPFTCSECNASFNQKSDLREHIMTHADEKFFSCDQCNASFKTKRLLKNHKSVHTDERPFSCTKCNASFKSKNGLVSHVMSHTSLKPFTCSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00201878;
90% Identity: iTF_00201878;
80% Identity: iTF_00201878;