Basic Information

Insect: Bemisia tabaci
Gene Symbol: set-17
Assembly: GCA_903994105.1
Location: NW:901143-930199[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0054 6.1 6.7 0.1 19 47 311 339 307 346 0.85

2 14 0.19 2.1e+02 1.7 0.0 21 45 369 393 364 401 0.88

3 14 1.2 1.4e+03 -0.9 0.0 22 46 398 422 393 428 0.83

4 14 0.01 12 5.8 0.0 21 52 425 456 411 458 0.87

5 14 1.9 2.1e+03 -1.5 0.0 21 46 453 478 450 486 0.80

6 14 3 3.4e+03 -2.1 0.0 21 44 481 504 470 509 0.79

7 14 0.059 67 3.3 0.0 22 45 510 533 501 536 0.88

8 14 0.006 6.7 6.5 0.0 21 46 537 562 533 568 0.86

9 14 0.011 13 5.6 0.0 22 48 566 592 561 598 0.85

10 14 1.2 1.3e+03 -0.8 0.0 23 46 595 618 590 624 0.83

11 14 0.23 2.6e+02 1.4 0.0 22 45 622 645 614 648 0.88

12 14 0.0067 7.6 6.4 0.0 21 46 649 674 645 680 0.86

13 14 0.012 14 5.5 0.0 22 48 678 704 673 710 0.85

14 14 2.5 2.8e+03 -1.9 0.0 21 44 705 728 702 730 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0054	6.1	6.7	0.1	19	47	311	339	307	346	0.85
2	14	0.19	2.1e+02	1.7	0.0	21	45	369	393	364	401	0.88
3	14	1.2	1.4e+03	-0.9	0.0	22	46	398	422	393	428	0.83
4	14	0.01	12	5.8	0.0	21	52	425	456	411	458	0.87
5	14	1.9	2.1e+03	-1.5	0.0	21	46	453	478	450	486	0.80
6	14	3	3.4e+03	-2.1	0.0	21	44	481	504	470	509	0.79
7	14	0.059	67	3.3	0.0	22	45	510	533	501	536	0.88
8	14	0.006	6.7	6.5	0.0	21	46	537	562	533	568	0.86
9	14	0.011	13	5.6	0.0	22	48	566	592	561	598	0.85
10	14	1.2	1.3e+03	-0.8	0.0	23	46	595	618	590	624	0.83
11	14	0.23	2.6e+02	1.4	0.0	22	45	622	645	614	648	0.88
12	14	0.0067	7.6	6.4	0.0	21	46	649	674	645	680	0.86
13	14	0.012	14	5.5	0.0	22	48	678	704	673	710	0.85
14	14	2.5	2.8e+03	-1.9	0.0	21	44	705	728	702	730	0.83

Sequence Information

Coding Sequence: ATGACCGAATCAAGTAGTGTGTTGACAGGTGAAAGTAGTGGTGGAAGATACCCAAGACGTGCCCTTCCGcataaaaattacaaagaacCCTCTGTTCCTGATGAGGACACTTTGATCTATTGCAATTCATGCCACGACACTTTTGAAggaggttgcaaaattcacaAGCTGCTTTATGTAAAGGATACACCTGTTCCGATCGACAAGGATGATAAGCTACGCGCTCTAAAAACTGTGCCGGAGGGTTTGATGGTCGGCGTCTCGTCAATTCCAGGAGCAGGAGACGGTGTCTGGACTATTAAGACCATCAAGAAGGATACCCTGTTTGGCCCTTACGAAGGTGTTTATAAGAGGAAATCTGACAATATTTTAACCAATTATAGTTGGGAGataaaaaaggaaaggaagccAATCAGCTTTGTGGATGCACAAGATATAGCGACCAGTAACTGGATGCGATTTGTCAACTGTGCCAGGAGCACCTACGAACAGAATCTTGTTGCACACCAGTACAAAGGCAAAATTTACTACCGAGCATTTGATGACATACCCTCTAACAGAGAATTATTCGTCTACTATGGAAGTAAATTCGCTGAAGAGCAGCTAGGaatcaaaaatttccaagaatatAAGGATCTACCACAGTCGGTTTTCCTATGCCCACACTGCGCTTTGGGATATTCTTCCCTGCTGCCTCTAAATAACCACAGTAGAGTCTGCCGGATGCGATATCTatcagaggaggaaaaagaaaagctaCAGCAGAAAAAACTACCTCAGTCACCAACCCAGAATCTATGTTCGTTCGGCGTGTGCGTTGTCTGCAATTCGAGAGTCTTACCTTCCGGCACAGCTCAGAAGACGAGCAAGAAATGCGACAACTGCGTGTTCAAGGATGAGGAGAGTGTCCTACTCCCCATGAAGAAAATAAGTGACAAGAATAGACCGTTCTCTTGCACTTATTGTGATAAGACATTCACCCAATCCAGTCATTTGGATAGGCATTTAAGGACGCATACGGGCGACAAACCATTCTCTTGTACTTATTGTGATAAGAAATTCACCGAATCCAGTATTCTAAATAATCATCTAAGGACGCACACGGGCGAAAAGCCATTCTCGTGCACTTattgtgataaaaaattcaCCGCATCTGGTCATTTAGATAGGCATTTAAGGACGCACACAGGCGACAGGCCATTCTCTTGTACTTATTGTGATAAGAAATTCACCGAATCTGGTCATTTAAATAAGCATTTAAGGACGCACACGGGCGAAAAGCCGTTCTCTTGTTTTTATTGTGGTAAGAAATTCACCCAATCCAGTGATTTAAATAAGCATCTGAGGATGCACACGGGTGAAAAGCCGTTCTCGTGCACTTattgtgataaaaaattcaCCGCATCTGGTCATTTAGATACGCACTTAAGGACGCACACGGGCGAAAAGCCGTTCTCTTGTACTTATTGTGATAAGAAATTCACCCGATCCAATCTTTTGAATGAGCATATAAGGACGCACACGGGCGACAAACCATTCTCTTGTTTTTATTGTGATAAGAAATTCACCCAATCCGGTCATTTAAATAGGCATCTAAGGACGCACACAGGCGACCAGCCATTCTCGTGCACTCATTGTGATGAGAAATTCACCCAATCCGGTCATTTAAATAGGCATTTAAGGACGCACACGGGCGACAAGCCGTTCTCGTGCACTTATTGTAATAAGAAATTCACCCAATCCGGTACTTTAAATAGGCATCTAAGGACGCACACGGGCGGCAAACCATTCTCGTGTACTTATTGTGACAAGAAATTCACCAAATCCGGTGATTTAAGTAAGCATCTAAGGACGCACGCGGGCGACAAACCATTCTCGTGTACTTATTGTGACAAGAAATTCACCCGATCCGGTGATTTAAGTAGGCATCTGAGGACGCACACGGGCGAAAAGCCATTCTCGTGCACTTATTGTGATAAGAAATTCACCCAATCCGGTACTTTAAATAGGCATCTAAGGACGCACACGGGCGACAAACCATTCTCGTGCACTTATTGTGACAAGAAATTCACCCAATCCGGTGATTTAAGTAGGCATCTAAAGACGCACACGGGCGAAAAGCCGTTCTCTTGTACTTATTGTGATAAGAAATTCACCCGATCTGGTCATTTAGATACGCATTTAAGGACGCACTCCAACGACTGA
Protein Sequence: MTESSSVLTGESSGGRYPRRALPHKNYKEPSVPDEDTLIYCNSCHDTFEGGCKIHKLLYVKDTPVPIDKDDKLRALKTVPEGLMVGVSSIPGAGDGVWTIKTIKKDTLFGPYEGVYKRKSDNILTNYSWEIKKERKPISFVDAQDIATSNWMRFVNCARSTYEQNLVAHQYKGKIYYRAFDDIPSNRELFVYYGSKFAEEQLGIKNFQEYKDLPQSVFLCPHCALGYSSLLPLNNHSRVCRMRYLSEEEKEKLQQKKLPQSPTQNLCSFGVCVVCNSRVLPSGTAQKTSKKCDNCVFKDEESVLLPMKKISDKNRPFSCTYCDKTFTQSSHLDRHLRTHTGDKPFSCTYCDKKFTESSILNNHLRTHTGEKPFSCTYCDKKFTASGHLDRHLRTHTGDRPFSCTYCDKKFTESGHLNKHLRTHTGEKPFSCFYCGKKFTQSSDLNKHLRMHTGEKPFSCTYCDKKFTASGHLDTHLRTHTGEKPFSCTYCDKKFTRSNLLNEHIRTHTGDKPFSCFYCDKKFTQSGHLNRHLRTHTGDQPFSCTHCDEKFTQSGHLNRHLRTHTGDKPFSCTYCNKKFTQSGTLNRHLRTHTGGKPFSCTYCDKKFTKSGDLSKHLRTHAGDKPFSCTYCDKKFTRSGDLSRHLRTHTGEKPFSCTYCDKKFTQSGTLNRHLRTHTGDKPFSCTYCDKKFTQSGDLSRHLKTHTGEKPFSCTYCDKKFTRSGHLDTHLRTHSND

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00201868;
90% Identity: iTF_00201868;
80% Identity: iTF_00201868;