Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.025 20 4.9 1.7 18 40 88 107 83 111 0.73

2 7 0.00012 0.094 12.4 1.4 17 41 115 136 105 137 0.86

3 7 2.1e-05 0.016 14.8 0.2 19 41 145 164 142 165 0.92

4 7 0.00011 0.087 12.5 0.4 19 41 173 192 170 193 0.92

5 7 0.0075 6 6.6 0.4 19 41 201 220 198 222 0.80

6 7 0.00027 0.22 11.2 2.6 18 41 228 248 217 250 0.87

7 7 0.00027 0.21 11.2 1.6 18 41 256 276 248 278 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.025	20	4.9	1.7	18	40	88	107	83	111	0.73
2	7	0.00012	0.094	12.4	1.4	17	41	115	136	105	137	0.86
3	7	2.1e-05	0.016	14.8	0.2	19	41	145	164	142	165	0.92
4	7	0.00011	0.087	12.5	0.4	19	41	173	192	170	193	0.92
5	7	0.0075	6	6.6	0.4	19	41	201	220	198	222	0.80
6	7	0.00027	0.22	11.2	2.6	18	41	228	248	217	250	0.87
7	7	0.00027	0.21	11.2	1.6	18	41	256	276	248	278	0.86

Coding Sequence: ATGCACCTACAAAATCACAGTAAAGTCTGCCGGATGCGATTTCTatcagaggaggaaaaagaaaagctaAAGCAGAAAAAACTACCTCGGTCGCCAACCCTGAATCTATGCTCGTTCGACGTGTGCGTTGTCTGCAATTCAAGAGTCTTACCTTGCGGCACAGCTCAGAAGACTAGCAAGAAATGCGACAACTGCGTGTTCAAGGATGAGGAGAGTGTCTTGCTCCCTATGAAGAATGTTGGTGACAAAAATAGACCGTTCTCTTGTACTTATTGTGATAAGAAATTCACCAAATCCGGTCATTTAAATGAACATTTAAGGACGCACACGGGCGAAAAGCCGTTCTCGTGCACTTattgtgataaaaaattcaCCCAATCCAGTAATTTAGATACGCATTTAAGGACGCACACGGGCGACAGGCCGTTCTCTTGTACTTATTGTGATAAGAAATTCACCCAATCCAGTAATTTAGATAGGCATCTAAGGACGCACACAGGCGACAGGCCATTCTCGTGCACTTATTGTGTAAAGAAATTCACCAAATCCAGTAATTTAGATACGCATCTAAGGACGCACACAGGCGACAGGCCATTCTCGTGCACTTATTGTGATAAGAAATTCACCATATCCAGTGatttaaatattcatttaaGGACGCACACGGGCGACAAGCCGTTCTCGTGCACTTATTGTGATAAGAAATTCACCAAATCCAGTAATTTAAATGAGCATCTAAGGACGCACACGGGCGAAAAGCCGTTCTCGTGCACTTATTGTGATAAGAAATTCACCACTTCCAGTAATCTTACCACGCATGTAAGGACGCACTCCAACGACTGA
Protein Sequence: MHLQNHSKVCRMRFLSEEEKEKLKQKKLPRSPTLNLCSFDVCVVCNSRVLPCGTAQKTSKKCDNCVFKDEESVLLPMKNVGDKNRPFSCTYCDKKFTKSGHLNEHLRTHTGEKPFSCTYCDKKFTQSSNLDTHLRTHTGDRPFSCTYCDKKFTQSSNLDRHLRTHTGDRPFSCTYCVKKFTKSSNLDTHLRTHTGDRPFSCTYCDKKFTISSDLNIHLRTHTGDKPFSCTYCDKKFTKSSNLNEHLRTHTGEKPFSCTYCDKKFTTSSNLTTHVRTHSND

Sequence clustering based on sequence similarity using MMseqs2