Btab006613.1
Basic Information
- Insect
- Bemisia tabaci
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_903994105.1
- Location
- NW:74220-95872[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-99 2e-95 319.1 30.9 1 300 30 359 30 359 0.90 2 2 0.0088 1.2e+02 1.4 5.7 120 172 357 409 356 433 0.89
Sequence Information
- Coding Sequence
- ATGGATCCAGGAGGACCTGGAGGTCGCCGAAGAGGCCCAACTAAACATTCTGTGGAAGATCAAGCTTTGGATCAGATTGCTAAAGAGGCAGAGGCGCGACTGGCCGCCCGGCGTCAAGCTCGAGCGGAGGCCCGAGAGATCAGGATGCGGGAACTAGAGCGGCAGCAGCGGGAGGCCGAGGAAAACGCCGATAAGGTCTACGATCTCTACGCCACCACAGATGTAATAAACCGATCAACTCGTGTTGGATCCTGTATCGCATCTCCTAGGGCAGCATCAGTTCTTTCAACCGGTGGGAACAATAGCTATCATTCTAGTAGGCGATCTTCTGAAGATTCGTTGGAAGATAGCATGGGCGTCAGAGATCTTAGGCAGGAATTCAGAGAAGTTGAAGATCGATTCCGGAAAGCAATGATTCAAAATGCTCAATTAGATAATGAAAAATCAGCAGCCTCTTATCAAGTAGATTTACTTAAAGATAAATTTGAAGAACTAGAGGAGTCACATGCCCAATTACAgCGAGAGCATAGAGATAAGTGTAGAGAACATGAACAGTTAAAAAGACTTTTTTCCAAAGTGCAAGGAGAACTGGAGTTTTTCCGGTTGCAACTGGAAGAAAGAGATAGTCTAATTAAGGAGCAAGGCCTCACTATAGTCGGGGGAGAATATTCATCTGAAGATGAAAAAAGTGACGAAGGACTCAGAGAGGTAAACGGCCTAGAAAATGGCTCAACAGACTCTTGTAATCCTGTCAATAATCATGATGAaaggaaaagaacaaaaaaatcaacaaaacggGCATTGGTGTCAATCAAAGCTGCAGAGCTTTTGAATTCAGCTGGAGAAGGATCATTAGATGTCCGGTTGCGGAAACTTGCCGCAGAAAAAGACGAACTACTAGATGAATTAAGGCATGTCAAATTAGAATTGGAAGAAGAACGAGGAAGATTGAGGGGCTTCAAAAGCATGAATGGAACTGATGGAGGCTTAGACTTTGAGGATGCTCAACGAGAGGCCAACAAATTACTTGGGGAGTATaaatttaaatggcaaaaagcTGAGCAAGATGTCTCCACTCTTCAAGCAAATGTTGCTCGGTTAGAAAGTCAAGTAATTCGATACAAATCGGCTGCGGAAACATCAGAAAAAGTTGAAGATgaattgaaaatagaaaaacgaAAGTTACAAAGAGAgTTAAGAGAGGCTCAGAGTAGGGTAGAAGAATTAGAAACATCTAATATGCATTTACACCGAAGACTAGATAAGCTTAAAAGTGCCAAATCAACTTTATTGAAAGAGCTGTAG
- Protein Sequence
- MDPGGPGGRRRGPTKHSVEDQALDQIAKEAEARLAARRQARAEAREIRMRELERQQREAEENADKVYDLYATTDVINRSTRVGSCIASPRAASVLSTGGNNSYHSSRRSSEDSLEDSMGVRDLRQEFREVEDRFRKAMIQNAQLDNEKSAASYQVDLLKDKFEELEESHAQLQREHRDKCREHEQLKRLFSKVQGELEFFRLQLEERDSLIKEQGLTIVGGEYSSEDEKSDEGLREVNGLENGSTDSCNPVNNHDERKRTKKSTKRALVSIKAAELLNSAGEGSLDVRLRKLAAEKDELLDELRHVKLELEEERGRLRGFKSMNGTDGGLDFEDAQREANKLLGEYKFKWQKAEQDVSTLQANVARLESQVIRYKSAAETSEKVEDELKIEKRKLQRELREAQSRVEELETSNMHLHRRLDKLKSAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -