Bbay001800.1
Basic Information
- Insect
- Bellardia bayeri
- Gene Symbol
- -
- Assembly
- GCA_950370525.1
- Location
- OX493264.1:30551214-30552841[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 7.1e-05 0.39 11.7 0.0 26 49 108 131 93 134 0.90 2 5 3.8 2.1e+04 -3.4 0.0 18 30 245 257 244 258 0.77 3 5 0.00034 1.8 9.6 0.1 20 44 275 299 268 304 0.87 4 5 0.02 1.1e+02 3.9 0.1 21 43 304 326 299 330 0.88 5 5 0.00079 4.3 8.4 0.3 21 44 332 355 326 365 0.82
Sequence Information
- Coding Sequence
- ATGTCATGcaATGACCTAAAAGATTCTTTGGATGTAACATTCCCCATCGTTTCCCTTACAACTGACATGTCTGATACTGAGGACAATATTCCAAATATTTTAGAACAAACTATGGATACTTCCGACGACAATAGCAATAATGAAGCATCTTGTGCTTCGGCAACAGATGACGATGAATGGCAAAACAAATCTAATAATTCGAGTAAAAAAtcagtaaaaaagaaaacatcatctgtgaagaaatcaaaaaaattatctaaGATCGAAGAaagtaaacaaaagaaaactagCGCAGATAATGAGGATGACGGGTTACAGGTGAAATGTAATGATTGTGATAAAATATTCGACAATTCGCGTTTATTAAGGCGACACCTGCGTCTGAATCATGTGTCagatgaaataaaaatacaatgcCTGTACTGTGAGGCAAAATTTAGTCGTCGCCACAATATGAATGCTCATATGCGTCGCATACATAAGACagaaaatttagaaaagtttCAAATACAACCGAAAAAATCAAATGCCGATAAGCAGTATGCCTGTCAACAATGTCCACGTTCATATACCAATAAATATAAGTTGATAGCTCATGTAAATAGTCATCATAATCCTGACAAAAAAAACACTACCCCTAAAGAGAAGGTACTGCTGCCGAAAAAGCGATTTTTATGCACACTTTGTGGTTTAAAGTTCGATAGCAAAGGAAACTTAAATATACACTTTAGACGGCATACTGGAGAGAAACCTTATAAATGTGAATTTTGTGATCGAGCCTATCCTAGATTATACGATGTTCAAGTACATCGTCGTACGCATACGGGCGAAAAGCCATACCAATGTACTCTGTGCGAAAAGACCTTTAGACAATCGAACAAATTGAAGATACACATGCGAACACATACCAACGAACGTCCCTACAAGTGTACACAGTGTGAAAAGGCTTTTAAACAATCGAAAGATTTGAATATACACACACGTACGCATACCGGCGAAAGGCCCTATAAGTGTGGTGTGTGCCAGAGTACATTTACACAGAGCAACTCGTTGCGTTTACATCAAATCAAACAACAACATTTGGAGAAAACAAATGCAGTGGAAGATTTGTCGGGAGTTATGACATTTATGTGTCAGTATTAA
- Protein Sequence
- MSCNDLKDSLDVTFPIVSLTTDMSDTEDNIPNILEQTMDTSDDNSNNEASCASATDDDEWQNKSNNSSKKSVKKKTSSVKKSKKLSKIEESKQKKTSADNEDDGLQVKCNDCDKIFDNSRLLRRHLRLNHVSDEIKIQCLYCEAKFSRRHNMNAHMRRIHKTENLEKFQIQPKKSNADKQYACQQCPRSYTNKYKLIAHVNSHHNPDKKNTTPKEKVLLPKKRFLCTLCGLKFDSKGNLNIHFRRHTGEKPYKCEFCDRAYPRLYDVQVHRRTHTGEKPYQCTLCEKTFRQSNKLKIHMRTHTNERPYKCTQCEKAFKQSKDLNIHTRTHTGERPYKCGVCQSTFTQSNSLRLHQIKQQHLEKTNAVEDLSGVMTFMCQY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00200073;
- 90% Identity
- iTF_00200073;
- 80% Identity
- iTF_00200073;