Bant004911.1
Basic Information
- Insect
- Belgica antarctica
- Gene Symbol
- ZC4H2
- Assembly
- GCA_000775305.1
- Location
- Belgica.12:110864-115376[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.2e-22 3.4e-19 68.0 13.1 2 60 18 76 17 77 0.97 2 4 0.64 7e+02 -0.2 0.6 58 68 286 296 284 298 0.69 3 4 1.4 1.5e+03 -1.3 0.2 7 14 300 307 295 311 0.67 4 4 3e-28 3.3e-25 87.3 7.2 2 70 318 385 317 385 0.95
Sequence Information
- Coding Sequence
- ATGCAGCAACCAGCTGTTATCATTCAGCAATCAACCGTCGCAGTTGGCCCTGACTCAACGCGTCTGACCTGCCCGTCGTGCCACGCCAGCATTTCCACCCGCGTCGAGCATGAAGCTTCTGGGAAAACCCACATAATTGCATTGGTCTTGTGTCTTTTCATTTGTTGGCCTTGCGTATGCATTCCGTACTGCACCGATACTTGTCGCAACGCTAACCACTATTGCCCGACGATTCAActagaaaagttgaaacttcgCATTGTTAACCAGGTCGAGAACTCGGATGCGGAAGAAAAAATGCTGGCCGAGTATCGGCGAGAACTGGAACTGTTGATGCAGGAGAAAATGAGCCATGTCGAAGAACTCCGCCAGATTCACGCAGACATAAATGCcATGGAAACTGTCATAAAGCAAGCCGAAGAGAACCGCTCCAGGTCGATGGGCATGGCGAATCGATTCCACGAAGAATACGTTCCACTTAAGACTGAGATTGACACAATGCGCCGGGACTATTTGGGATTAGAAAGATTGCCAGAATTGCATGAAGAAGAAGGATCCATCGTTACACCAGAGCCGACTCCTGTCTCCGCACTCAACAACCAAGCACAATCTCAGCATCATCCATTGCCAACGTCTGATTCACCACACATCACACCCTTAAACCCATCGCACGGATTTCTGCCACCAGCACCGCCGTCAGTGGGAAGTGGGCTACGCGGACTCTCATCAAGCAAACCCAATGAAATGTCGAACCAAGCATCACGTATACAACAAGCACCGTCATCAATTGGAATGCATCCAACATTCAGGTCTGATTTCAATGTCTCATTAAgACAACAACCGCCACCCATGAAGAGTTGCTTGTCCTGTCATCAGCAGATTCACCGCAACGCCCCGATTTGCCCTCTCTGTAAAGCCAAAAGCCtgATCAGCACTGCTAGGTATGGACCTGACCCTGCCCAGATGAGATGCCCAAGCTGTGGACAGATGGTTGTCACGAGAATTGACTATGAATCATCCACAAAGACGCATTTAATGGCTGGATTAATCTGTCTTTTGTTTTGGCCGTGTGTCTGCCTTCCTTACCTAGTCGACTCTTGCAAGAACGCTAACCATTACTGCACGAACTGCTCGGCTTACCTTGGAACCTATAGAGGCTCGTAA
- Protein Sequence
- MQQPAVIIQQSTVAVGPDSTRLTCPSCHASISTRVEHEASGKTHIIALVLCLFICWPCVCIPYCTDTCRNANHYCPTIQLEKLKLRIVNQVENSDAEEKMLAEYRRELELLMQEKMSHVEELRQIHADINAMETVIKQAEENRSRSMGMANRFHEEYVPLKTEIDTMRRDYLGLERLPELHEEEGSIVTPEPTPVSALNNQAQSQHHPLPTSDSPHITPLNPSHGFLPPAPPSVGSGLRGLSSSKPNEMSNQASRIQQAPSSIGMHPTFRSDFNVSLRQQPPPMKSCLSCHQQIHRNAPICPLCKAKSLISTARYGPDPAQMRCPSCGQMVVTRIDYESSTKTHLMAGLICLLFWPCVCLPYLVDSCKNANHYCTNCSAYLGTYRGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -