Bant000193.1
Basic Information
- Insect
- Belgica antarctica
- Gene Symbol
- ham
- Assembly
- GCA_000775305.1
- Location
- Belgica.365:11924-17331[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0051 11 5.5 0.1 26 45 253 272 244 276 0.89 2 4 0.0015 3.2 7.2 0.6 21 45 276 300 272 304 0.89 3 4 0.00058 1.3 8.6 0.2 20 45 304 329 299 335 0.88 4 4 0.0011 2.5 7.6 0.0 27 45 414 432 410 440 0.89
Sequence Information
- Coding Sequence
- atgCGAGAGAAAGACCATTCGCCGAGAAAGATGCTTCCAAGTCCGAAACAAGGAGCGAAATATCCGATGGGGTTGCCGTTGGCTGGTCTTCAGCTGCCCTTTGACCTTCTCACATCGATCAGCCGCTCGTCTTCGTCAGCCTCGTCGACCGcgtcttcatcgtcatcgtccCAAAGGCAACAGCAGTCCGATCAACCGTTAGACCTACGTGTCGAGCACAAAAAGTCATCGCACGATAACGAAAGCGAGAACCACATAGAAGATGAGAACAGTAACTCAATTATCGCCAATAACAACTACTTGAAAAGTGATAGGAATCATGAAAAGTCACCGAGTCCGAGCGTCGATCGGCACGCCAAGAGTTTCAATCAGAATGCAAAGCGCATGCTCAGCAATCAACTAAACGGATTGAATGGACTGAAACTAGACGCGGCGCAACAGGCGCAGCGACTATCGAACAGCCAGCATCTATTTCCACCACATCCGTCACTCCACCCGTTGATGCTGCAGGCGATCGCGAAAGGCGTCCGCCTACCAATGCCATTCAATTCGGCGTTTCCCCTGCTCCAGCACCCGTCGTCGTTCGACATGCAGCGATTGAAGGACCAGGATCTAATGTCAAACGTCCCGCAGCTGCTGCAGAATGTAAATAACCAAGCCGCGTCGCGACAAAATCATAATAACAATAATGTGAAGCAGGTTAACCATAATTTATCGTCAAACTCCGCCATGACTAACAAGAACAAGGATCGCTATGCGTGCAAGTTTTGCGGGAAAGTTTTCCCGCGCTCGGCGAATCTCACGCGCCACCTTCGGACGCACACCGGCGAACAGCCTTACAGCTGCAAATACTGCGAACGTTCCTTCAGCATCTCCAGCAATCTGCAGCGGCACGTACGAAACATTCACAACAAGGAGAGACCGTTCAAGTGCGCGTTGTGCGAGCGCTGCTTCGGACAACAAACGAATCTCGATCGTCATTTAAAGAAACACGAAGCCGATGCTATTGGGCTAGGCTTAGGCATAGACGAGCGCTTGAAGAACATCAGAAGAAACTCGCGAGGCATCCCAGAAGATTCGTACTTTGAAGAGATAAGACAATTCATGGGGAAAGTCACACAAATGCCATTACACTTAAGACACATAAAGCCCGAGACACAAACGAATTCATCATCGCGAAGCTCATCGCCCAGCGACTTGCACGACAATAATAATGATATTAAATACAGCTTAATGGATTGTCCGCTATGCGAGCGATGCTTCGGACAACAAACGAATCTCGATCGTCACTTGAAGAAGCACGAAGCCGATGCGGCCGGAATCAACATCGGCCTAGGCGACTCACCGTCGTCCAACGAAGCCGAACGTGAAGATGCATATTTCGATGAGATTCGCTCGTTTATGGGGAAAGTGACATATTCGGGCAATCCCCATTTGTATGCTCCGCTGGGTGTAACGAATATGGAAGCTGATTTAGACGAAGCAGCTAGCAGCAGTGACAACGACTTAATAAATATCGAACACGAGCATAGCGATAAAGATACCATCAATAATAATGATCGAATTGAAGTGACAACATGA
- Protein Sequence
- MREKDHSPRKMLPSPKQGAKYPMGLPLAGLQLPFDLLTSISRSSSSASSTASSSSSSQRQQQSDQPLDLRVEHKKSSHDNESENHIEDENSNSIIANNNYLKSDRNHEKSPSPSVDRHAKSFNQNAKRMLSNQLNGLNGLKLDAAQQAQRLSNSQHLFPPHPSLHPLMLQAIAKGVRLPMPFNSAFPLLQHPSSFDMQRLKDQDLMSNVPQLLQNVNNQAASRQNHNNNNVKQVNHNLSSNSAMTNKNKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYSCKYCERSFSISSNLQRHVRNIHNKERPFKCALCERCFGQQTNLDRHLKKHEADAIGLGLGIDERLKNIRRNSRGIPEDSYFEEIRQFMGKVTQMPLHLRHIKPETQTNSSSRSSSPSDLHDNNNDIKYSLMDCPLCERCFGQQTNLDRHLKKHEADAAGINIGLGDSPSSNEAEREDAYFDEIRSFMGKVTYSGNPHLYAPLGVTNMEADLDEAASSSDNDLINIEHEHSDKDTINNNDRIEVTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00199332; iTF_00199242;
- 90% Identity
- iTF_00199332; iTF_00199242;
- 80% Identity
- iTF_00199332; iTF_00199242;