Bant010216.1
Basic Information
- Insect
- Belgica antarctica
- Gene Symbol
- -
- Assembly
- GCA_000775305.1
- Location
- Belgica.323:19546-21833[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.04 88 2.6 0.4 14 31 165 182 156 199 0.82 2 5 0.07 1.5e+02 1.9 0.0 22 45 202 225 198 232 0.88 3 5 0.00016 0.34 10.4 0.0 23 47 261 285 245 290 0.87 4 5 0.025 55 3.3 0.0 26 45 291 310 285 315 0.93 5 5 6.1e-05 0.13 11.7 0.3 21 48 484 511 476 513 0.93
Sequence Information
- Coding Sequence
- ATGGAGAAACGAAAGGTCGAGGAGTATTGTCAGTTCTGTTTGAAGCAGCAGGATGAAATGAGCGTCTATATCGGCATAGAGATGGAACAAGTTTTCTTCGACTTGACACAAATTCACCTCGACACCTCTAAGTATTGCCGGAAAATATGTCTGGTACCGTGCCTACAAGAGCTAGAAGAAGTACTCAAATATCGAGACACTTTAGTTAGGAATCAACAAATTCTCGACGATCTGTTCGACAGCCCAGACGCTGAATACCTCGAGACCACTGAACCGAAACTTGAAGAATctcaggaaattgaaaataaattcgcaGATGAAAGCATCACGACAGAGTGTAATACATGTGGAGAGCTGATCAGCGAAAGTGATTTTGACCACCACGTCTGTCCTCCAGCCTCGAAGTTAGAACAAGACTCAGAAGAATTCGTGTCATCGGTAGAGCTGGACTTCCTGGATTGCGAAGCTAAAGACACGACAAAGTgcataaagaaaaaatattcaaagaagaaactcaaagAACCAATCACTTGCCCCAAGTGTCTTCGGCGGTTCTACTATAAAGAGTACTTCCGGTTTCACTACAAAGACGTACACGGCGAGAATCAGGAAACAGTTTGTCAGTTTTGCggaaaagtcttcaaaaatgGCCGTAGACTGAATTCCCACGTTGTTATTCACCAGACAGAAGCCGAGAAGAGATACAAATGCGACCAGTGCTCCAAGCCTTTTCATTCATCGGGTGATTTGTCTCGACACAAGCTGGTTCATTCGGAAATCAAGCCACACACTTGTCACATCTGCTTCAAGGGATTTTCACAGTCTTACGCCCTTAAGCTTCACATCGACGTCCATAATCGAGTCAAATTTACTTGCGACATGTGTTCATCGACTTTTAGTGCCAAACGCACCTTGAAGAAGCACTTAGACAAGTGTTTGAAAGGAATTGCAACAAGCCGACTGCAGTCTTTCCGAGCACCTAAGGGCGAAAACCCGTCAAGCCGAGAAAAGTACAAATGCATTTCCGAGGGCTGCGACCGACAATTCACCTCACGGCAATATCTTGGCATTCACCTGGAGAAAACTCATGGAATCAAAtacgaaaattttgaaacaacttGCCTCGAGTGCAATCtagtttttgagaaattcgGTGAGTACTCCGTACACATTCGAACGCACAGTTGCCGCTTTGTGTGTGAACTTTGCAAGCTTCGATACAAAACCGAGGAAAAGCTGCAAAGTCACATGGAAAAAGCCCACAAAGAAGGCGAAGATCGGCCGTTCCTTTGTTCTGAGCTAGGCTGCGGTGGGAGATTCAAAAGAGCCGAACACCTCAGGAGTCATCATCAGCACAAGCATTCAGACGAGCGGAAAATTGAGTGCAACTACTgtgacttgaaatttcatcagcGCGGAGCTTTCAACGTTCACATGCgAATTCACATGAACGAGAAGCCGTTTAGCTGCTGGCGATGCGATCACGTATgcaaaacatcatcaaatctACGGCAGCACATGTTACTTGTCCACAACGAAGTGAACATTTATTTGTGCAAAACCTGCCAGCAAACATACAAGTACAGCACCGAAGTGAGTCAGCATCGAAAAGAGTGCTCGACGAGTACGGTAGAATTGAATTGA
- Protein Sequence
- MEKRKVEEYCQFCLKQQDEMSVYIGIEMEQVFFDLTQIHLDTSKYCRKICLVPCLQELEEVLKYRDTLVRNQQILDDLFDSPDAEYLETTEPKLEESQEIENKFADESITTECNTCGELISESDFDHHVCPPASKLEQDSEEFVSSVELDFLDCEAKDTTKCIKKKYSKKKLKEPITCPKCLRRFYYKEYFRFHYKDVHGENQETVCQFCGKVFKNGRRLNSHVVIHQTEAEKRYKCDQCSKPFHSSGDLSRHKLVHSEIKPHTCHICFKGFSQSYALKLHIDVHNRVKFTCDMCSSTFSAKRTLKKHLDKCLKGIATSRLQSFRAPKGENPSSREKYKCISEGCDRQFTSRQYLGIHLEKTHGIKYENFETTCLECNLVFEKFGEYSVHIRTHSCRFVCELCKLRYKTEEKLQSHMEKAHKEGEDRPFLCSELGCGGRFKRAEHLRSHHQHKHSDERKIECNYCDLKFHQRGAFNVHMRIHMNEKPFSCWRCDHVCKTSSNLRQHMLLVHNEVNIYLCKTCQQTYKYSTEVSQHRKECSTSTVELN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00199287;
- 90% Identity
- iTF_00199287;
- 80% Identity
- iTF_00199287;